HHsearch alignment for GI: 254780240 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=97.25 E-value=0.00055 Score=45.72 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=30.7
Q ss_pred EEEECCCCCCHHHHHHHHH----HHH--CCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9998788999678999999----971--8948957899999996001456666776413445
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS----QKL--NVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSL 58 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la----~~~--~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~l 58 (201)
T Consensus 22 ~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~~~l~~~~~~~g~~~~~~~~~g~l 83 (231)
T pfam06745 22 VLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPPEDLRENAKSFGWDLEKLEEEGKL 83 (231)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCE
T ss_conf 99985897259999999999999865896899981379999999999829985898646967