HHsearch alignment for GI: 254780240 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.

Probab=96.20  E-value=0.0046  Score=39.95  Aligned_cols=34  Identities=29%  Similarity=0.542  Sum_probs=27.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC-----CCEECHHHHH
Q ss_conf             699987889996789999999718-----9489578999
Q gi|254780240|r    2 RIIFLGPPGSGKGTQACRLSQKLN-----VPQLSTGDML   35 (201)
Q Consensus         2 ~I~i~G~PGsGK~T~a~~la~~~~-----~~~is~gdll   35 (201)
T Consensus         5 ~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~   43 (168)
T pfam07724         5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYM   43 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             999889899899999999999967985344885575654