HHsearch alignment for GI: 254780240 and conserved domain: pfam08433
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=97.34 E-value=0.00063 Score=45.36 Aligned_cols=110 Identities=23% Similarity=0.203 Sum_probs=55.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---C--CCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 9998788999678999999971---8--9489578999999960014566667764134455410356655542023222
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL---N--VPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDC 77 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~---~--~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~ 77 (201)
T Consensus 2 ivl~G~P~SGKSt~A~~L~~~l~~~~~~v~vi~d-~~~~~~--~-~~y~~s~~Ek~~R~~------l~s~v~r~Ls~~-- 69 (266)
T pfam08433 2 IILTGLPSSGKSTRAKELAKYLEEKGYDVIVISD-ESLGIE--S-DDYKDSKKEKFLRGS------LRSAVKRDLSKN-- 69 (266)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC-CCCCCC--C-CCCCCCHHHHHHHHH------HHHHHHHHHCCC--
T ss_conf 7985799996889999999999975993899780-012675--3-100010478999999------999998751668--
Q ss_pred CCEEEECCCHHHHHHHH--HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 53178638011124578--8876665312522210355542212566423311
Q gi|254780240|r 78 DSGFILDGYPRTVDQAK--SLHAFISNMDCAIDAVIELRVEDASMFKRIQVRV 128 (201)
Q Consensus 78 ~~g~ilDGFPRt~~Qa~--~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~ 128 (201)
T Consensus 70 -~iVIlD~~--NYiKG~RYEL~C~-Ak~~~t~~c~v~~~~p~e~~~~~N~~r~ 118 (266)
T pfam08433 70 -TIVIVDSL--NYIKGFRYELYCI-AKEAKTTYCVVYCKAPLDTCLKWNEERG 118 (266)
T ss_pred -CEEEECCC--CCHHHHHHHHHHH-HHHCCCCEEEEEECCCHHHHHHHHCCCC
T ss_conf -88995487--4045689999999-9863888489996899899998621477