HHsearch alignment for GI: 254780241 and conserved domain: COG0201
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=851.35 Aligned_cols=420 Identities=49% Similarity=0.834 Sum_probs=386.5
Q ss_pred CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHH
Q ss_conf 12588988358788999999999999998506798987398899998730355378899864277022204687354789
Q gi|254780241|r 10 SNLNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPY 89 (444)
Q Consensus 10 ~~~~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~Py 89 (444)
T Consensus 6 ~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~--~~~~n~~~GGal~~~SIfaLGI~Py 83 (436)
T COG0201 6 LPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRF--LILFNMFSGGALSRGSIFALGIMPY 83 (436)
T ss_pred HHHHHCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHCCCCCCCCHHHHHCCHHH
T ss_conf 67875501024889999999999999999807286898887899988886455--6888986165513464999755889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999985215478641146368999998869999999999999999723556--762258750479999999999
Q gi|254780241|r 90 ISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNG--QGIVSDSDYFFVFSTIITLLG 167 (444)
Q Consensus 90 ItASIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~--~~~~~~~~~~~~~~~il~L~a 167 (444)
T Consensus 84 ITASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L~~ 163 (436)
T COG0201 84 ITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTA 163 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999999999877889998734854299999999999999999999999987103577653456513799999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999987408898752036210146576788743333200123--215899999999999999999886533232
Q gi|254780241|r 168 GTMFLVWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGS--ISTPLMLLIFSSTVAVIALVIFFERAQRRL 245 (444)
Q Consensus 168 Gs~il~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~--~~~~~~l~~~~~~l~vi~~iV~v~~~~rrI 245 (444)
T Consensus 164 Gt~~lmwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ii~~vvyve~~~r~I 243 (436)
T COG0201 164 GTMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRI 243 (436)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_conf 99999999988860484654599999999987489999899998613158889999999999999999999750007886
Q ss_pred HHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 1011012116642356431144420000237999999999868888875077772---4799988753066763169999
Q gi|254780241|r 246 LIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS---PTWIVGLVDSLGHGRSFYMVLY 322 (444)
Q Consensus 246 Pi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~y~i~y 322 (444)
T Consensus 244 PI~y~~~~----~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~~~~y~~~y 319 (436)
T COG0201 244 PIQYAKRQ----SYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPGSPVYIALY 319 (436)
T ss_pred EHHHHHHH----HCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 34543544----14786744315752457758999999999999999982777632115634668976067869999999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999862379899999999638844762798579999999999999999999999999999999984884100
Q gi|254780241|r 323 SVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSL 402 (444)
Q Consensus 323 ~ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~ 402 (444)
T Consensus 320 ~~lii~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iailp~l~~~~~~~~~~~ 399 (436)
T COG0201 320 VVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAILPELLGTAGGVPFYF 399 (436)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999998329999999999769928884997247999999999999999999999999999999850776033
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 257999999999999999999999985265643
Q gi|254780241|r 403 SGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFK 435 (444)
Q Consensus 403 gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~ 435 (444)
T Consensus 400 gGTslLI~V~V~l~~~~qi~~~l~~~~Y~~~~~ 432 (436)
T COG0201 400 GGTSLLIVVGVALDTYEQIEAELLMEKYPGLRR 432 (436)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 670024006999999999999999851665775