HHsearch results for GI: 254780241 and protein with PDBid: 2ww9_A
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=0 Score=678.74 Aligned_cols=388 Identities=17% Similarity=0.200 Sum_probs=320.0
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 83587889999999999999985067989873988999987303553788998642770222046873547899999999
Q gi|254780241|r 17 FSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIV 96 (444)
Q Consensus 17 ~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASIi~ 96 (444)
..|++|+|||++||++++++||+| +||+||+|..+ ..+..|.+++++.++|+ +|+|+|+|||+|||||||+|
T Consensus 23 p~r~~~lr~ki~~Tl~~l~iy~~~-~IPlpGi~~~~-----~~~~~d~l~~l~~~~a~--~~~SlfaLGI~PyItASIIm 94 (490)
T 2ww9_A 23 PFEKLPFDDKIVYTIFAGLIYLFA-QFPLVGLPKAT-----TPNVNDPIYFLRGVFGC--EPRTLLEFGLFPNISSGLIL 94 (490)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCC-SSCCSCHHHHT-----TTCSSCCCTTTHHHHTC--CSSSTTSSTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCHHH-----HHHHCCHHHHHHHHHCC--CHHHHHHHCHHHHHHHHHHH
T ss_conf 888998888999999999999851-46879978556-----43011569999997331--11059997739999999999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99985215478641146368999998869999999999999999723556762258750479999999999999999999
Q gi|254780241|r 97 QLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLG 176 (444)
Q Consensus 97 QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~wl~ 176 (444)
|||+.. .++|+|||||+||||+|++|||+|+++|++||++++.+.. +..+.+......+++++++|++++||+|
T Consensus 95 QLL~~~--~l~~l~~~g~~gr~ki~~~tr~lti~la~iqa~~~v~~~~----~~~~~~~~~~~~i~~~l~~g~~~v~wL~ 168 (490)
T 2ww9_A 95 QLLAGL--KVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGY----FGDDLSVVQIGLINFQLVGAGIFTTLLA 168 (490)
T ss_dssp HHHHHH--TSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----SSCCCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHC--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998636--0766261367679999999999999999999999999975----1667431578999999975789999999
Q ss_pred HHHHH-CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCC--------------------------------CCHHHHHH
Q ss_conf 98740-8898752036210146576788743333200123--------------------------------21589999
Q gi|254780241|r 177 EQITM-RGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGS--------------------------------ISTPLMLL 223 (444)
Q Consensus 177 e~It~-~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~--------------------------------~~~~~~l~ 223 (444)
|+||| ||+|||+|++|++||++++|+.+.+..+...... ......+.
T Consensus 169 E~It~~~GiGnGiSLiI~~~I~~~i~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 248 (490)
T 2ww9_A 169 EVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISAFNRDYLPNLT 248 (490)
T ss_dssp HHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCCCCSSSSCCSHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88715545014689999999999999863042020246764100346999999999988888999999998875699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC----CC
Q ss_conf 99999999999998865332321011012116642356431144420000237999999999868888875077----77
Q gi|254780241|r 224 IFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDV----SS 299 (444)
Q Consensus 224 ~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~----~~ 299 (444)
.+..++++++.++|+|+++||||+||+| ++++++|+|+|+||+||||+|||+++++.|.++.+++.. ..
T Consensus 249 ~li~~~~v~~~vvy~~~~~~~IPi~~~~-------~~g~~~~~PiKln~agvmPiIfasall~~~~~~~~~~~~~~~~~~ 321 (490)
T 2ww9_A 249 TTIIVLAIAIIVCYLQSVRVELPIRSTR-------ARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNE 321 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCCEECCCBCSS-------SSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHHHCC
T ss_pred HHHHHHHHHEEEEEEEEEEEEECCCCCC-------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999998872799964337984032143-------357774021014533430799999999879999999987621224
Q ss_pred CHHHHHHHHHHCC-----------------C---------CC----CHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHH
Q ss_conf 2479998875306-----------------6---------76----3169999999999999998623-79899999999
Q gi|254780241|r 300 SPTWIVGLVDSLG-----------------H---------GR----SFYMVLYSVFIVFFAFFYTAIV-FNPKEAADNLK 348 (444)
Q Consensus 300 ~~~~~~~~~~~~~-----------------~---------~~----~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe~L~ 348 (444)
..++..++...+. + .. .+|.++|++++++|+|||+.++ +||||+|||||
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~pi~~i~Y~~~~~~l~i~Fs~f~~~i~g~~P~~iAe~Lk 401 (490)
T 2ww9_A 322 PTHIICKIMGHYENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFK 401 (490)
T ss_dssp CCSSSCTTSBCCSCCSSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 06899999875156677655664331122687313334330415899999999999999999999970899999999999
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 63884476279857999999999999999999999999999999998488410025799999999999999999999-99
Q gi|254780241|r 349 KHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYL-IA 427 (444)
Q Consensus 349 k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~-~~ 427 (444)
|+|++|||+||| +|++||+|+++|+|++||+|++++|++|++++... +|||+++.|++++++++|++.+. .+
T Consensus 402 k~g~~IPGiRp~-~t~~yL~kvi~rit~~Gai~l~~iavl~~~lg~~g------~Gt~ill~v~vi~~~~~~i~~~~~q~ 474 (490)
T 2ww9_A 402 DQGITLMGRREQ-NVAKELNKVIPIAAVTGASVLSLITVIGESLGLKG------KAAGIVVGIAGGFSLLEVITIEYQQS 474 (490)
T ss_dssp HHHHTSSSCCCC-CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS------SHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 869957798983-37999998899999999999999999999997502------55558999999999999999999998
Q ss_pred HHHHH
Q ss_conf 85265
Q gi|254780241|r 428 QQYEG 432 (444)
Q Consensus 428 ~~Y~~ 432 (444)
+.|..
T Consensus 475 e~~~~ 479 (490)
T 2ww9_A 475 GGQSA 479 (490)
T ss_dssp CSSCS
T ss_pred HHHHH
T ss_conf 64899