RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter asiaticus str. psy62] (444 letters) >2akh_Y Preprotein translocase SECY subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Y (Y:41-400) Length = 360 Score = 331 bits (849), Expect = 2e-91 Identities = 180/360 (50%), Positives = 254/360 (70%), Gaps = 3/360 (0%) Query: 81 VFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIA 140 +F+LGIMPYISASII+QL+ P+L +KKEGE GR+ I+QYTRY T++L I Q+ GIA Sbjct: 1 IFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIA 60 Query: 141 VGLKN---GQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLIIFSGIV 197 GL N QG+V + + F F+ +++L+ GTMFL+WLGEQIT RGIGNG+S+IIF+GIV Sbjct: 61 TGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIV 120 Query: 198 AGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNR 257 AGLP ++ +E R G + ++LL+ AV V+F ER QRR+++ Y KRQ G R Sbjct: 121 AGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRR 180 Query: 258 MFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSF 317 ++ ++LPLK+N AGV+P+IFASS++L PATI + + W+ + L G+ Sbjct: 181 VYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPL 240 Query: 318 YMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVV 377 Y++LY+ I+FF FFYTA+VFNP+E ADNLKK G F+PGIRPG++TA +ID V+TR+T+V Sbjct: 241 YVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLV 300 Query: 378 GAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKS 437 GA Y+ +C+ PE + VP GTSLLI+V V++D + Q+Q +++ QYE KK+ Sbjct: 301 GALYITFICLIPEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKA 360 >1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} (A:) Length = 436 Score = 288 bits (737), Expect = 1e-78 Identities = 69/453 (15%), Positives = 153/453 (33%), Gaps = 59/453 (13%) Query: 14 FASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSG 73 + K ++ +T I L++Y I + + + + Sbjct: 14 VELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAG-----------AQIPAIFEFWQTI 62 Query: 74 GAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGI 133 A + +LGI P ++A II+QL+ + + + R + + ++++ Sbjct: 63 TASRIGTLITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCF 120 Query: 134 LQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLIIF 193 ++A G F II + G++ L++L E ++ GIG+G+ L I Sbjct: 121 VEAVLFVGAGAFG-----ILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIA 175 Query: 194 SGIVAGLPSSLVSVLEL------GRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLI 247 +G+ + + + + + T+ V +V++ E + + + Sbjct: 176 AGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPL 235 Query: 248 QYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSS-------- 299 + + + P+K +P I A++L + Sbjct: 236 AHGRIKGAV-------GKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYE 288 Query: 300 ------------SPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAI-VFNPKEAADN 346 S + + V S YM+ + V F F+ +PK A Sbjct: 289 GGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKR 348 Query: 347 LKKHGGFIPGIRPGDRTALH-IDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGT 405 + G I G R ++ H + + +TV+ + ++ + + GT Sbjct: 349 IGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANF------IGALGGGT 402 Query: 406 SLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSR 438 +L+ VS+V Q+ ++ + + K Sbjct: 403 GVLLTVSIVYRMYEQLLRERTSELHPAIAKLLN 435 >2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y (Y:211-434) Length = 224 Score = 195 bits (496), Expect = 1e-50 Identities = 72/227 (31%), Positives = 135/227 (59%), Gaps = 4/227 (1%) Query: 215 SISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAG 274 ++ L + V A + ++A+RR+ +QY ++ VG R++ +Y+P+KLN AG Sbjct: 1 EVNLVAFLFFLAFIVLAFAGMAAVQQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAG 60 Query: 275 VVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYT 334 V+P IFA+++L +P + + G+ + R + + + ++ F + YT Sbjct: 61 VIPIIFAAAILQIPIFLAAPF---QDNPVLQGIANFFNPTRPSGLFIEVLLVILFTYVYT 117 Query: 335 AIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIA 394 A+ F+PK A++L+++GGFIPGIRPG+ T ++++++R+T+ GA +L V + P+ + Sbjct: 118 AVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQN 177 Query: 395 VTGV-PVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSRSK 440 +TG+ ++ SG LLI+V V LDT+ Q++ L+ + YEG + R + Sbjct: 178 LTGIHSIAFSGIGLLIVVGVALDTLRQVESQLMLRSYEGFLSRGRLR 224 >2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y (Y:12-195) Length = 184 Score = 191 bits (486), Expect = 2e-49 Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 5/183 (2%) Query: 21 KDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMA 80 +L+ R++FT++ L YR G +IP P +D + ++ G+FG+ N+FSGG ER + Sbjct: 1 PELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFS 60 Query: 81 VFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIA 140 +F+LGIMPYI+A+II+Q++ VP+LE L KEGE+GR++INQYTR + LG Q + +A Sbjct: 61 IFALGIMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLA 120 Query: 141 VGLKNGQG-----IVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLIIFSG 195 +G FF F ++T + G L+W+ E+IT GIGNG SLIIF+G Sbjct: 121 TAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWMAERITEYGIGNGTSLIIFAG 180 Query: 196 IVA 198 IV Sbjct: 181 IVV 183 >3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (G:1-181) Length = 181 Score = 173 bits (439), Expect = 6e-44 Identities = 68/177 (38%), Positives = 117/177 (66%), Gaps = 6/177 (3%) Query: 14 FASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSG 73 + K+L+ + +FT++ ++YR G++IP+P I+ + ++ +F L+++FSG Sbjct: 5 LKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSG 64 Query: 74 GAVERMAVFSLGIMPYISASIIVQLIAATVPSLENL-KKEGEQGRKVINQYTRYATVLLG 132 G + R+ VF+LG+MPYISASI++QL+ +PSL+ L K+EG+ GR IN+YT+Y T+ + Sbjct: 65 GNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVA 124 Query: 133 ILQAYGIAVGLKN-----GQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGI 184 +Q+ GIA ++ G +V + F+ T++TL+ GTMFLVW+ ++IT +GI Sbjct: 125 TVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGI 181 >3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} (C:1-183) Length = 183 Score = 172 bits (437), Expect = 8e-44 Identities = 70/179 (39%), Positives = 117/179 (65%), Gaps = 8/179 (4%) Query: 14 FASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQ-----SKSAGIFGLF 68 F + + +L+ RI+FT +ALIV+R G YIP+P ++ ++ + F+ + AGI + Sbjct: 5 FKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFY 64 Query: 69 NMFSGGAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYAT 128 ++F+GGA+ R +VF++ + PYI+ASII+QL+A+ +PSL+ + +EGE+GRK +YTR T Sbjct: 65 DVFTGGALSRFSVFTMSVTPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLT 124 Query: 129 VLLGILQAYGIAVGLKNG---QGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGI 184 +L+G QA+ ++ L + F + +++L GTMFL+WLGE+IT +GI Sbjct: 125 LLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMSMLAGTMFLLWLGERITEKGI 183 >3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} (C:208-387) Length = 180 Score = 165 bits (420), Expect = 8e-42 Identities = 58/186 (31%), Positives = 109/186 (58%), Gaps = 7/186 (3%) Query: 213 VGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNT 272 +G ++ + + + + I +I ++A+RR+ IQY +R G R++ +YLP+K+N Sbjct: 1 LGGLNLLEWIFLIAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLPIKVNQ 60 Query: 273 AGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFF 332 GV+P IFAS+++ +P+ I + + G Y+++Y + + FF +F Sbjct: 61 GGVIPIIFASAIVSIPSAIASITNNETLKNLF-------RAGGFLYLLIYGLLVFFFTYF 113 Query: 333 YTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEAL 392 Y+ ++F+P+E ++N++K+GG+IPG+RPG T ++ VL RVT +GA +LV + + P + Sbjct: 114 YSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLV 173 Query: 393 IAVTGV 398 V Sbjct: 174 QGAIKV 179 >2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A (A:1-215) Length = 215 Score = 157 bits (398), Expect = 3e-39 Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 15/206 (7%) Query: 14 FASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSG 73 +IV+TI A ++Y F PL + + ++ + Sbjct: 20 VELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVGLPKATTPNVND-------PIYFLRGV 71 Query: 74 GAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGI 133 E + G+ P IS+ +I+QL+ + + + + R++ T+ ++ + Sbjct: 72 FGCEPRTLLEFGLFPNISSGLILQLL--AGLKVIKVNFKIQSDRELFQSLTKVFAIVQYV 129 Query: 134 LQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMR-GIGNGVSLII 192 + D + L+G +F L E I G +G +I Sbjct: 130 ILTNIFIFAG----YFGDDLSVVQIGLINFQLVGAGIFTTLLAEVIDKGFGFSSGAMIIN 185 Query: 193 FSGIVAGLPSSLVSVLELGRVGSIST 218 I L + V ++ T Sbjct: 186 TVVIATNLVADTFGVSQIKVGEDDQT 211 >2wwb_A Protein transport protein SEC61 subunit alpha isoform 1; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (A:252-476) Length = 225 Score = 153 bits (388), Expect = 4e-38 Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 48/237 (20%) Query: 233 ALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIM 292 A+VI+F+ + L I+ + + + P+KL +P I S+L+ I Sbjct: 2 AVVIYFQGFRVDLPIKSARYRGQY-------NTYPIKLFYTSNIPIILQSALVSNLYVIS 54 Query: 293 GFIDVSSSPTWIVGLVDSLGH---------------------------------GRSFYM 319 + S +V L+ + Y+ Sbjct: 55 QMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYI 114 Query: 320 VLYSVFIVFFAFFYTAI-VFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVG 378 V FF+ + + + K+ A LK+ + G R ++ + G Sbjct: 115 VFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETS-MVHELNRYIPTAAAFG 173 Query: 379 AGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFK 435 + + + + L A+ SGT +L+ V+++ G Sbjct: 174 GLCIGALSVLADFLGAI------GSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALL 224 >2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A (A:241-490) Length = 250 Score = 147 bits (372), Expect = 3e-36 Identities = 35/256 (13%), Positives = 76/256 (29%), Gaps = 49/256 (19%) Query: 222 LLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFA 281 L +A+ +V + + + L I+ + + N + P+KL G + +F+ Sbjct: 7 LTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTN-------NVYPIKLLYTGCLSVLFS 59 Query: 282 SSLLLLPATIMGFIDVS----------------------------------SSPTWIVGL 307 ++L + + PT Sbjct: 60 YTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENANNLLAVPTFPLSLLAPPTSFFKG 119 Query: 308 VDSLGHGRSFYMVLYSVFIVFFAFFYTAI-VFNPKEAADNLKKHGGFIPGIRPGDRTALH 366 V Y V ++FA + AI + ++ A K G + G R + A Sbjct: 120 VTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQN-VAKE 178 Query: 367 IDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLI 426 ++ V+ V GA L + + E+L + +++ ++ + I Sbjct: 179 LNKVIPIAAVTGASVLSLITVIGESL------GLKGKAAGIVVGIAGGFSLLEVITIEYQ 232 Query: 427 AQQYEGVFKKSRSKKK 442 + + Sbjct: 233 QSGGQSALNQVLGVPG 248 >3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (G:232-271,G:331-352) Length = 62 Score = 74.0 bits (182), Expect = 4e-14 Identities = 24/59 (40%), Positives = 38/59 (64%) Query: 235 VIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMG 293 +++ + A+RR+ IQYP RQVG +++ +YLP+K+N AG+ P A +L A I G Sbjct: 1 IVYVQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPAGINPVELAENLHKAGAFIPG 59 Score = 31.6 bits (72), Expect = 0.21 Identities = 14/21 (66%), Positives = 16/21 (76%) Query: 339 NPKEAADNLKKHGGFIPGIRP 359 NP E A+NL K G FIPG+RP Sbjct: 42 NPVELAENLHKAGAFIPGVRP 62 >3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (G:272-330) Length = 59 Score = 66.1 bits (162), Expect = 9e-12 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 275 VVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYT 334 V+P IFA +LLL+P+T++ F+ +I + D G FY LY FIVFF +FYT Sbjct: 1 VIPIIFAQALLLIPSTLLNFVQNP----FIKVIADMFQPGAIFYNFLYVTFIVFFTYFYT 56 Query: 335 AIV 337 A++ Sbjct: 57 AVL 59 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 29.1 bits (65), Expect = 1.1 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 5/41 (12%) Query: 235 VIFFER-AQRRLLIQYPKRQVGNRMFQDDVSYLPLK--LNT 272 A+ + ++ ++Q GN ++ D PL+ L T Sbjct: 71 TREIHNEAESQ--LRAAQQQWGNDFYKRDPRIAPLRGALAT 109 >2wwb_A Protein transport protein SEC61 subunit alpha isoform 1; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (A:63-154) Length = 92 Score = 27.7 bits (62), Expect = 3.5 Identities = 10/28 (35%), Positives = 17/28 (60%) Query: 75 AVERMAVFSLGIMPYISASIIVQLIAAT 102 A R + LGI P +++ +I+QL+A Sbjct: 8 ASNRGTLMELGISPIVTSGLIMQLLAGA 35 >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} (X:1-194,X:401-472) Length = 266 Score = 26.9 bits (59), Expect = 5.3 Identities = 5/29 (17%), Positives = 9/29 (31%) Query: 373 RVTVVGAGYLVCVCIFPEALIAVTGVPVS 401 + + G G I L + P+ Sbjct: 30 SIVIAGGGSTFTPGIVLXLLDHLEEFPIR 58 >3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} (B:) Length = 290 Score = 26.8 bits (59), Expect = 6.2 Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 5/57 (8%) Query: 317 FYMVLYSVFIVFFAFFYTAIVF--NPKEAADNLKKHG---GFIPGIRPGDRTALHID 368 +Y+ Y V FA ++ +P + P + + + Sbjct: 43 YYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQDQLKSPGVTLRPDVYGEKGLDISYN 99 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.326 0.142 0.403 Gapped Lambda K H 0.267 0.0580 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,174,042 Number of extensions: 144405 Number of successful extensions: 578 Number of sequences better than 10.0: 1 Number of HSP's gapped: 541 Number of HSP's successfully gapped: 33 Length of query: 444 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 353 Effective length of database: 1,879,794 Effective search space: 663567282 Effective search space used: 663567282 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 56 (25.7 bits)