BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter asiaticus str. psy62] (444 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter asiaticus str. psy62] Length = 444 Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/444 (100%), Positives = 444/444 (100%) Query: 1 MASAVEQFVSNLNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSK 60 MASAVEQFVSNLNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSK Sbjct: 1 MASAVEQFVSNLNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSK 60 Query: 61 SAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVI 120 SAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVI Sbjct: 61 SAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVI 120 Query: 121 NQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQIT 180 NQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQIT Sbjct: 121 NQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQIT 180 Query: 181 MRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFER 240 MRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFER Sbjct: 181 MRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFER 240 Query: 241 AQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS 300 AQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS Sbjct: 241 AQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS 300 Query: 301 PTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPG 360 PTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPG Sbjct: 301 PTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPG 360 Query: 361 DRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQ 420 DRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQ Sbjct: 361 DRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQ 420 Query: 421 IQGYLIAQQYEGVFKKSRSKKKNS 444 IQGYLIAQQYEGVFKKSRSKKKNS Sbjct: 421 IQGYLIAQQYEGVFKKSRSKKKNS 444 >gi|254780521|ref|YP_003064934.1| flagellar biosynthesis repressor FlbT [Candidatus Liberibacter asiaticus str. psy62] Length = 153 Score = 28.9 bits (63), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 10/81 (12%) Query: 85 GIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLK 144 I P+ +IVQ+I VP+ KK+ +I+ RY +L I+Q + + LK Sbjct: 50 AITPFHQLYLIVQMIF-LVPT----KKDY-----LIDLGRRYINILFNIIQNQQLILALK 99 Query: 145 NGQGIVSDSDYFFVFSTIITL 165 N + +++ +F I TL Sbjct: 100 NIESLINSGRFFEALKNIRTL 120 >gi|254780971|ref|YP_003065384.1| phosphoribosylformylglycinamidine synthase subunit I [Candidatus Liberibacter asiaticus str. psy62] Length = 219 Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 16/22 (72%) Query: 99 IAATVPSLENLKKEGEQGRKVI 120 IAA P ++ +KK+ +QG KV+ Sbjct: 62 IAARTPVMQAIKKKAQQGIKVM 83 >gi|254781025|ref|YP_003065438.1| deoxyuridine 5 27-triphosphate nucleotidohydrolase [Candidatus Liberibacter asiaticus str. psy62] Length = 154 Score = 24.3 bits (51), Expect = 4.8, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 13/81 (16%) Query: 132 GILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLI 191 G+ YG+A N G + DSDY ++ LG FL+ G +I LI Sbjct: 73 GLALNYGVAC--LNSPGTI-DSDYRGEIKILLINLGQENFLIMRGMRI--------AQLI 121 Query: 192 IFSGIVAGLPSSLVSVLELGR 212 I + + A SL+S + +G+ Sbjct: 122 IANSVRAH--PSLISAMPMGK 140 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.142 0.403 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 268,660 Number of Sequences: 1233 Number of extensions: 11383 Number of successful extensions: 32 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 10 length of query: 444 length of database: 328,796 effective HSP length: 77 effective length of query: 367 effective length of database: 233,855 effective search space: 85824785 effective search space used: 85824785 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 40 (20.0 bits)