HHsearch alignment of GI: 254780242 and MMDB domain: 2j01_P_

>2j01_P (P:) 50S ribosomal protein L15; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}
Probab=100.00  E-value=0  Score=310.98  Aligned_cols=146  Identities=36%  Similarity=0.515  Sum_probs=134.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCEEEECCCCCCCCCCCCCEEEEEH
Q ss_conf             976668889998767610203157898985787766764236898-66-4443168530116763554656552147751
Q gi|254780242|r    1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVS-VR-GFEGGQMPLYRRLPKRGFVNIAGSDFVTISL   78 (151)
Q Consensus         1 m~L~~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~-~~-gfEGGQ~Pl~rrlPKrGF~~~~~~~~~~iNL   78 (151)
                      |+||||+|+||++++++|+|||+|||+|||||||||||++|+|.. .+ +|||||||||||+||+||+++++..|.++||
T Consensus         1 m~l~~L~~~~g~k~~kkR~gRg~gsG~Gkt~grG~kGq~~r~g~~~~~~~feggq~Pl~rr~pK~Gf~~~~~~~~~~~~l   80 (150)
T 2j01_P            1 MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPKRGMQGQVPGEIKRPRY   80 (150)
T ss_dssp             ----CCSSSCCCSSCCCCCCCCSCSSSSSCTTCSSCCSSSCSSCCCCSSSCCSSSCTTCCSCCCCCSCCCSSCSCCCCCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEHHCCCCCCEEEEEE
T ss_conf             96355888989863763666788899896699999898888888767741137887654147600010345542111343


Q ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf             1204543024555332233555543086254433204630443144148999982699999999749889989
Q gi|254780242|r   79 GLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI  151 (151)
Q Consensus        79 ~~L~~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~ii  151 (151)
                      ..|+.+++.+.+   ++||++.|+++++++... .+|||++|++ .||+|+|++||++|+|+||+|||+|++|
T Consensus        81 ~~l~~~~~~~~~---~~i~~~~l~~~~~v~~~~-~vKlLg~G~~-~ki~i~v~~~S~~A~~kIe~aGG~v~~v  148 (150)
T 2j01_P           81 QGVNLKDLARFE---GEVTPELLVRAGLLKKGY-RLKILGEGEA-KPLKVVAHAFSKSALEKLKAAGGEPVLL  148 (150)
T ss_dssp             EEEETTTTTTSC---SCCCTTTTTTSSSCSSCC-EEEEECSSCC-CSSCCCCSBCCHHHHHHHHTSCCCCCCC
T ss_pred             EHHHHHHHHCCC---CCCCHHHHHHCCCCCCCC-CEEEECCCCE-EEEEEEEEECCHHHHHHHHHCCCEEEEE
T ss_conf             044566653344---335699999708655587-1788648857-6579998861899999999869989996