HHsearch results for GI: 254780242 and protein with PDBid: 1vq8_O
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=99.18 E-value=2.7e-11 Score=78.22 Aligned_cols=75 Identities=17% Similarity=0.341 Sum_probs=57.6
Q ss_pred CEEEECCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEEC
Q ss_conf 53011676355465655214775112045430245553322335555430862544332046304431441489999826
Q gi|254780242|r 55 PLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGAS 134 (151)
Q Consensus 55 Pl~rrlPKrGF~~~~~~~~~~iNL~~L~~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S 134 (151)
|+++.+-+|= ..++..+.+|||++|+.+... ++++ + -+.||||+|+++.+++|.|+.||
T Consensus 25 ~~wk~va~rL--~~srr~r~~VnLski~~~~k~-----~~~v---------v-----vpgKVLg~G~l~~k~~V~A~~fS 83 (116)
T 1vq8_O 25 AVWGDVAERL--EKPRRTHAEVNLGRIERYAQE-----DETV---------V-----VPGKVLGSGVLQKDVTVAAVDFS 83 (116)
T ss_dssp HHHHHHHHHH--TSCTTTSEEEEHHHHHHHCCT-----TSEE---------E-----EEEEEECCSCCCSCCEEEEEEEC
T ss_pred HHHHHHHHHH--HCCCCCCCCCCHHHHHHHCCC-----CCEE---------E-----EEEEEECCCEECCCEEEEEECCC
T ss_conf 7999999998--345446887559999975768-----9989---------9-----97589678747678899971417
Q ss_pred HHHHHHHHHCCCEEEE
Q ss_conf 9999999974988998
Q gi|254780242|r 135 ASAVEKVEKLGGQVIV 150 (151)
Q Consensus 135 ~sA~ekIE~aGG~v~i 150 (151)
++|+++||+|||.+++
T Consensus 84 ~sA~~kIe~aGg~iti 99 (116)
T 1vq8_O 84 GTAETKIDQVGEAVSL 99 (116)
T ss_dssp HHHHHHHHHHSEEEEH
T ss_pred HHHHHHHHHCCCEEEH
T ss_conf 8999999981988988