RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780242|ref|YP_003064655.1| 50S ribosomal protein L15 [Candidatus Liberibacter asiaticus str. psy62] (151 letters) >gnl|CDD|180155 PRK05592, rplO, 50S ribosomal protein L15; Reviewed. Length = 146 Score = 190 bits (486), Expect = 1e-49 Identities = 76/152 (50%), Positives = 101/152 (66%), Gaps = 7/152 (4%) Query: 1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59 MKLNE+ GS K +KRV RGIGSG GKTAGRG KGQK+RSG VR GFEGGQMPLYRR Sbjct: 1 MKLNELKPAPGSRKARKRVGRGIGSGLGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRR 60 Query: 60 LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSD 119 LPKRGF NI ++ ++LG L + + E+ L A+GL+R++ +G+++L + Sbjct: 61 LPKRGFTNIFRKEYAVVNLGDLNKFEEGT------EVTLEALKAAGLIRKNIKGVKVLGN 114 Query: 120 GDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151 G+L K+ ++ S SA E +E GG+V I Sbjct: 115 GELTKKLTVKAHKFSKSAKEAIEAAGGKVEEI 146 >gnl|CDD|162189 TIGR01071, rplO_bact, ribosomal protein L15, bacterial/organelle. Length = 145 Score = 134 bits (339), Expect = 1e-32 Identities = 66/149 (44%), Positives = 87/149 (58%), Gaps = 7/149 (4%) Query: 2 KLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRL 60 KLNE+ KG+ K +KRV RGIGSG GKT+GRG KGQK+RSG VR GFEGGQMPLYRRL Sbjct: 1 KLNELKPAKGAKKRRKRVGRGIGSGLGKTSGRGHKGQKARSGGKVRRGFEGGQMPLYRRL 60 Query: 61 PKRGFVNIAG-SDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSD 119 PKRGF N ++ ++LG L + L GL+ + + +++L + Sbjct: 61 PKRGFSNKRFKKEYAEVNLGKLAKLFPN-----GEVVTLETLKEKGLITKKIKFVKVLGN 115 Query: 120 GDLKAKVVLRVSGASASAVEKVEKLGGQV 148 G L + ++ S SA +E GG V Sbjct: 116 GKLTKPLTVKAHRVSKSAKAAIEAAGGSV 144 >gnl|CDD|180560 PRK06419, rpl15p, 50S ribosomal protein L15P; Reviewed. Length = 148 Score = 39.8 bits (94), Expect = 3e-04 Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 27/153 (17%) Query: 13 CKVKK-RVARGIGSGT-GKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVN--I 68 K +K R +R G GT G G +G + +G + K GF Sbjct: 6 KKSRKLRGSRTHGGGTHKNHRGAGSRGGRGMAGRHKHKWTWVVKYGPDWYGKHGFKRPPK 65 Query: 69 AGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRI----------LS 118 + TI++G L D L A G I + L Sbjct: 66 LIKEVSTINVGELDELADL-------------LKAEGKAEEEDGKIVVDLTELGYDKVLG 112 Query: 119 DGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151 G + +V++ S A+EK+E GG+V++ Sbjct: 113 GGKVTRPLVIKADAFSEKAIEKIEAAGGEVVLS 145 >gnl|CDD|179705 PRK04005, PRK04005, 50S ribosomal protein L18e; Provisional. Length = 111 Score = 28.3 bits (64), Expect = 0.80 Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 116 ILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151 +L G L KV + S +A EK+E+ GG+ + I Sbjct: 59 VLGSGKLDHKVTVAALSFSETAKEKIEEAGGKALTI 94 >gnl|CDD|179044 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed. Length = 491 Score = 27.0 bits (61), Expect = 1.9 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 20/81 (24%) Query: 52 GQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDAS------VLVASG 105 G++ L R + K F + G +Q Y+ KD + + ++ G Sbjct: 61 GRVMLKRVMGKASFATLQDGS------GRIQLYVSKDDVGEEALEAFKKLDLGDIIGVEG 114 Query: 106 LVRRSQRG--------IRILS 118 + +++ G + +L+ Sbjct: 115 TLFKTKTGELSVKATELTLLT 135 >gnl|CDD|171993 PRK13347, PRK13347, coproporphyrinogen III oxidase; Provisional. Length = 453 Score = 26.5 bits (59), Expect = 3.0 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%) Query: 100 VLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGAS 134 L A GLV GIR+ +G + ++R A+ Sbjct: 407 PLAADGLVTIDGGGIRVTPEG----RPLIRAVAAA 437 >gnl|CDD|184034 PRK13405, bchH, magnesium chelatase subunit H; Provisional. Length = 1209 Score = 26.6 bits (59), Expect = 3.0 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 7/30 (23%) Query: 33 RGVKGQKSRSGVSVRGFEGGQMPLYRRLPK 62 RG K + SG GQM + RRLPK Sbjct: 135 RGKKKEGGSSG-------EGQMAMLRRLPK 157 >gnl|CDD|185477 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional. Length = 418 Score = 26.2 bits (58), Expect = 4.1 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 12/54 (22%) Query: 62 KRGFVNIAGSDFVTISLGLLQ------AYIDKDRLDCSSEIDASVLVAS--GLV 107 K GF+ S FV S L+ AYID D + + +D SV VA+ GLV Sbjct: 244 KLGFM----SAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLV 293 >gnl|CDD|181834 PRK09414, PRK09414, glutamate dehydrogenase; Provisional. Length = 445 Score = 25.1 bits (56), Expect = 7.2 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 4/32 (12%) Query: 121 DLKAKVVLRVSGA---SASAVEKVEKLGGQVI 149 + K V+ VSG+ + A+EK ++LG +V+ Sbjct: 229 SFEGKRVV-VSGSGNVAIYAIEKAQQLGAKVV 259 >gnl|CDD|179496 PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional. Length = 327 Score = 25.3 bits (56), Expect = 7.4 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%) Query: 107 VRRSQRGIRILSDGDL-KAKVVLRVSGASAS--AVEKVEKLGG 146 +RR + G+ I +D + +A+ LRV+ A A+ AV KV LGG Sbjct: 179 LRR-RVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG 220 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.317 0.137 0.372 Gapped Lambda K H 0.267 0.0683 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,370,962 Number of extensions: 146059 Number of successful extensions: 293 Number of sequences better than 10.0: 1 Number of HSP's gapped: 289 Number of HSP's successfully gapped: 17 Length of query: 151 Length of database: 5,994,473 Length adjustment: 85 Effective length of query: 66 Effective length of database: 4,157,793 Effective search space: 274414338 Effective search space used: 274414338 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (24.3 bits)