HHsearch alignment for GI: 254780243 and conserved domain: TIGR01310

>TIGR01310 L7 60S ribosomal protein L7; InterPro: IPR005998 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Eukaryotic ribosomal protein, L7, contains an N-terminal bZIP DNA binding domain and a second, DNA-binding domain has been mapped to the 50 C-terminal amino acids of the protein . In addition to its role in translation, L7 has also been shown to be involved in nuclear-receptor mediated transcriptional control. There is no bacterial homologue of this protein. ; GO: 0003735 structural constituent of ribosome, 0030528 transcription regulator activity, 0006412 translation, 0015934 large ribosomal subunit.
Probab=95.51  E-value=0.014  Score=34.75  Aligned_cols=53  Identities=25%  Similarity=0.211  Sum_probs=48.0

Q ss_pred             CEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHE
Q ss_conf             62599997336898989999999838346798289829978970798621114
Q gi|254780243|r    8 QKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLV   60 (64)
Q Consensus         8 ~~ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV   60 (64)
T Consensus        80 kl~FViR~~Gin~~~PK~rk~L~~LRL~~~~nGVFvK~nK~~~~~Lr~vEPYV  132 (248)
T TIGR01310        80 KLLFVIRIKGINGLPPKPRKVLRLLRLKQVNNGVFVKVNKATLEMLRIVEPYV  132 (248)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCEEEEEECHHHHHHCCEECCEE
T ss_conf             74899861360788886699997504211120243666567785132015647