Query gi|254780243|ref|YP_003064656.1| 50S ribosomal protein L30 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 64
No_of_seqs 107 out of 803
Neff 4.7
Searched_HMMs 33803
Date Tue May 24 02:22:29 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780243.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2zjr_W 50S ribosomal protein 99.9 2.5E-23 7.5E-28 145.2 5.5 55 10-64 1-55 (55)
2 >1bxy_A Protein (ribosomal pro 99.9 6.3E-23 1.8E-27 143.1 7.3 58 7-64 1-58 (60)
3 >3i1n_Z 50S ribosomal protein 99.9 1E-22 3E-27 142.0 7.0 59 6-64 1-59 (59)
4 >1vq8_W 50S ribosomal protein 99.6 1.3E-15 4E-20 103.9 7.3 55 10-64 2-56 (154)
5 >3jyw_F 60S ribosomal protein 98.3 2.1E-07 6.2E-12 60.2 1.3 57 8-64 32-88 (194)
6 >2zkr_w 60S ribosomal protein 98.1 1E-06 3E-11 56.5 1.0 57 7-63 109-165 (270)
7 >2uz8_A Eukaryotic translation 19.9 30 0.00087 16.6 0.3 35 27-61 9-53 (60)
8 >3e0r_A C3-degrading proteinas 18.7 44 0.0013 15.7 1.0 26 33-58 3-29 (120)
9 >3iar_A Adenosine deaminase; p 10.3 1.3E+02 0.004 13.1 1.7 33 8-40 144-176 (179)
10 >1ef4_A Subunit N, DNA-directe 6.6 1.7E+02 0.0051 12.5 0.8 15 22-36 27-41 (55)
No 1
>>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (W:)
Probab=99.88 E-value=2.5e-23 Score=145.21 Aligned_cols=55 Identities=42% Similarity=0.690 Sum_probs=54.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC
Q ss_conf 5999973368989899999998383467982898299789707986211147839
Q gi|254780243|r 10 ITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64)
Q Consensus 10 ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64)
++|||+||+||+|++|++|+++|||+|+|++|+++|||++||||++|+|||+|||
T Consensus 1 lkItlvrs~ig~~~~~~~tl~~LGL~k~~~~v~~~dtP~irGmi~kVkhLV~VeE 55 (55)
T 2zjr_W 1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55 (55)
T ss_dssp CEEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCCCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHEEEEEC
T ss_conf 9499974889999899999999299979998895799789889985143169859
No 2
>>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes; 1.90A {Thermus thermophilus} (A:)
Probab=99.88 E-value=6.3e-23 Score=143.13 Aligned_cols=58 Identities=41% Similarity=0.714 Sum_probs=57.1
Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC
Q ss_conf 2625999973368989899999998383467982898299789707986211147839
Q gi|254780243|r 7 MQKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64)
Q Consensus 7 ~~~ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64)
|++++|||+||.||+|++|++|+++|||+|+|++|+++|||+++|||++|+|||+|||
T Consensus 1 Ma~~~It~vrs~ig~~~~~k~tl~~LgL~k~~~~v~~~~tp~~rGmi~kV~hlV~v~e 58 (60)
T 1bxy_A 1 MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEV 58 (60)
T ss_dssp CCEEEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEE
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHEEEEEE
T ss_conf 9967999935889989899999998199979998995799789879984012469997
No 3
>>3i1n_Z 50S ribosomal protein L30; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_Y 3e1b_R 3e1d_R 1vs6_Y 3i1p_Z 3i1r_Z 3i1t_Z 3i20_Z 3i22_Z 2qam_Y* 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* ... (Z:)
Probab=99.87 E-value=1e-22 Score=141.99 Aligned_cols=59 Identities=34% Similarity=0.596 Sum_probs=56.7
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC
Q ss_conf 22625999973368989899999998383467982898299789707986211147839
Q gi|254780243|r 6 KMQKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64)
Q Consensus 6 ~~~~ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64)
|++.++|+|+||+||+|++|++|+++|||+|+|++++++|||+++|||++|+|||+|||
T Consensus 1 Mak~~~V~~vrs~ig~~~~~k~tl~~LgL~k~~~~v~~~dtp~~rGmi~kVkhLV~v~E 59 (59)
T 3i1n_Z 1 MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 59 (59)
T ss_dssp -CCCEEEECCSCCSSCCHHHHHHHHHHTCCSTTCCEEECCCHHHHHHHHHTGGGCEEEC
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHEEEEEC
T ss_conf 99607999925879999899999998099989998995799889889996344469849
No 4
>>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (W:)
Probab=99.61 E-value=1.3e-15 Score=103.95 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=53.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC
Q ss_conf 5999973368989899999998383467982898299789707986211147839
Q gi|254780243|r 10 ITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64)
Q Consensus 10 ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64)
+.|+++||.+|.|+++++|+++|||+++|++|+++|||+++|||++|+|+|.++|
T Consensus 2 ~~Virirg~~g~~~~~~~tL~~LgL~k~~~~v~~~~tp~~~gmL~~V~~~V~~g~ 56 (154)
T 1vq8_W 2 HALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGE 56 (154)
T ss_dssp EEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSGGGEEEEC
T ss_pred EEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHEECCCEEEEC
T ss_conf 6899937889989899999998099866876897189889856755354156736
No 5
>>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F (F:20-213)
Probab=98.27 E-value=2.1e-07 Score=60.15 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=51.8
Q ss_pred CEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEEC
Q ss_conf 625999973368989899999998383467982898299789707986211147839
Q gi|254780243|r 8 QKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIVE 64 (64)
Q Consensus 8 ~~ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~VeE 64 (64)
+-+-|-++||..+.+++.+++++-|+|+++|+.|+.++||++.||+++|+.-|.+-|
T Consensus 32 kl~~VIRirg~~~v~~~v~~~L~lLrL~~~~~~vfv~~~~~~~~mL~~v~pyV~~G~ 88 (194)
T 3jyw_F 32 GLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGY 88 (194)
T ss_dssp CCCCCCCCSCSSCCCHHHHHHHGGGCCCSSSCBCCCCCSSTTTTHHHHTTTTSCEEC
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHEECCCCEEEEHHHHHHHHHHHHHHHHCCC
T ss_conf 738999952556699972899999877211477268756999999997206765178
No 6
>>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (w:)
Probab=98.05 E-value=1e-06 Score=56.47 Aligned_cols=57 Identities=18% Similarity=0.047 Sum_probs=52.2
Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHEEEE
Q ss_conf 262599997336898989999999838346798289829978970798621114783
Q gi|254780243|r 7 MQKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRCRVLDDTPSVRGMISTVHHLVRIV 63 (64)
Q Consensus 7 ~~~ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~v~~~dtP~irGmi~kV~hLV~Ve 63 (64)
.+-+-|.++|+..+.+++.+++++-|+|+++|+.|+.++||++.||+++|...|.+-
T Consensus 109 ~kl~~VIRirg~~~i~p~v~k~L~lLrL~~i~~~vfv~~t~~~~~mLk~V~pyVt~G 165 (270)
T 2zkr_w 109 PKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWG 165 (270)
T ss_dssp --CEEEECCSCSSSSCTTSSSHHHHTCCCSSSEEEEECCCHHHHHTTTSSTTSCBCC
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHEEEE
T ss_conf 607999995366688989999999847784042699968888999999987712333
No 7
>>2uz8_A Eukaryotic translation elongation factor 1 epsilon-1; protein biosynthesis, aminoacyl-tRNA synthetase, GST, nuclear protein, RNA-binding protein; HET: MSE; 2.0A {Homo sapiens} (A:1-60)
Probab=19.89 E-value=30 Score=16.59 Aligned_cols=35 Identities=34% Similarity=0.575 Sum_probs=25.6
Q ss_pred HHHHHHCCCCCCCEEE--------E--CCCHHHHHHHHHHHHHEE
Q ss_conf 9999838346798289--------8--299789707986211147
Q gi|254780243|r 27 KVLIGLGLNKMNRCRV--------L--DDTPSVRGMISTVHHLVR 61 (64)
Q Consensus 27 ~tl~~LGL~k~~~~v~--------~--~dtP~irGmi~kV~hLV~ 61 (64)
..-+.|||++-|+-.. + .+-|+.-|...-..|||+
T Consensus 9 ~LEk~LGL~~gNKYsaQg~~kiPVLqtN~GP~L~Gl~TIA~HLVk 53 (60)
T 2uz8_A 9 LLEKSLGLSKGNKYSAQGERQIPVLQTNNGPSLXGLTTIAAHLVK 53 (60)
T ss_dssp HHHHHTTCCSCCCCEEETTTTEEEEECSSCCEEESHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHCCCCCCEEEEEEECCCCEEECHHHHHHHHHH
T ss_conf 886336889988831488980548996487236332999999999
No 8
>>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural genomics, protein structure initiative; 2.30A {Streptococcus pneumoniae} (A:68-187)
Probab=18.68 E-value=44 Score=15.67 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=18.6
Q ss_pred CCCCCCCEEEECCCH-HHHHHHHHHHH
Q ss_conf 834679828982997-89707986211
Q gi|254780243|r 33 GLNKMNRCRVLDDTP-SVRGMISTVHH 58 (64)
Q Consensus 33 GL~k~~~~v~~~dtP-~irGmi~kV~h 58 (64)
|++|+|+.|+.-.+| +|.+.+.+-.+
T Consensus 3 G~KKl~~ivIK~~~~~EIE~LLa~~~~ 29 (120)
T 3e0r_A 3 GRKKLARLIVKVENPLEIEGILSKTDS 29 (120)
T ss_dssp SSCSEEEEEEEESSHHHHHHHHTTCSC
T ss_pred CCCCCEEEEEEECCHHHHHHHHHCCCC
T ss_conf 878802799991999999999976997
No 9
>>3iar_A Adenosine deaminase; purine metabolism, structural genomics, structural genomics consortium, SGC, acetylation, disease mutation; HET: 3D1; 1.52A {Homo sapiens} PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 1a4m_A* 1a4l_A* ... (A:61-239)
Probab=10.27 E-value=1.3e+02 Score=13.06 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=27.8
Q ss_pred CEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCE
Q ss_conf 625999973368989899999998383467982
Q gi|254780243|r 8 QKITVQQIGSPIRRPSVQRKVLIGLGLNKMNRC 40 (64)
Q Consensus 8 ~~ikItlvkS~iG~~~~~r~tl~~LGL~k~~~~ 40 (64)
..+.+|..-+=.+.+...++++..||-+|+|+-
T Consensus 144 ~gl~~t~HAGE~~~~~~i~~Ai~~l~~~RIGHG 176 (179)
T 3iar_A 144 SGIHRTVHAGEVGSAEVVKEAVDILKTERLGHG 176 (179)
T ss_dssp HTCEEEEEESSSSCHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHCCCCCHHH
T ss_conf 499044325677981149999987188533267
No 10
>>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} (A:)
Probab=6.65 E-value=1.7e+02 Score=12.49 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHCCCC
Q ss_conf 989999999838346
Q gi|254780243|r 22 PSVQRKVLIGLGLNK 36 (64)
Q Consensus 22 ~~~~r~tl~~LGL~k 36 (64)
.+...+.+.+|||+|
T Consensus 27 g~~~~~aLD~Lgl~R 41 (55)
T 1ef4_A 27 GEDPKDVLDDLGLKR 41 (55)
T ss_dssp TCCHHHHHHHHTCSS
T ss_pred CCCHHHHHHHCCCEE
T ss_conf 999789998849805
Done!