254780244
30S ribosomal protein S5
GeneID in NCBI database: | 8209225 | Locus tag: | CLIBASIA_00645 |
Protein GI in NCBI database: | 254780244 | Protein Accession: | YP_003064657.1 |
Gene range: | -(134556, 135155) | Protein Length: | 199aa |
Gene description: | 30S ribosomal protein S5 | ||
COG prediction: | [J] Ribosomal protein S5 | ||
KEGG prediction: | rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 | ||
SEED prediction: | SSU ribosomal protein S5p (S2e) | ||
Pathway involved in KEGG: | Ribosome [PATH:las03010] | ||
Subsystem involved in SEED: | Ribosome SSU bacterial;
Ribosomal protein S5p acylation | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 199 | 30S ribosomal protein S5 [Candidatus Liberibacter asiat | |||
315122801 | 196 | 30S ribosomal protein S5 [Candidatus Liberibacter solan | 1 | 2e-93 | |
222148383 | 189 | 30S ribosomal protein S5 [Agrobacterium vitis S4] Lengt | 1 | 9e-68 | |
116251557 | 189 | 30S ribosomal protein S5 [Rhizobium leguminosarum bv. v | 1 | 3e-67 | |
159184984 | 189 | 30S ribosomal protein S5 [Agrobacterium tumefaciens str | 1 | 4e-67 | |
86357322 | 189 | 30S ribosomal protein S5 [Rhizobium etli CFN 42] Length | 1 | 7e-67 | |
325293319 | 189 | 30S ribosomal protein S5 [Agrobacterium sp. H13-3] Leng | 1 | 9e-67 | |
227821773 | 189 | 30S ribosomal protein S5 [Sinorhizobium fredii NGR234] | 1 | 2e-66 | |
15965126 | 189 | 30S ribosomal protein S5 [Sinorhizobium meliloti 1021] | 1 | 7e-65 | |
49474387 | 182 | 30S ribosomal protein S5 [Bartonella quintana str. Toul | 1 | 2e-63 | |
240850818 | 182 | 30S ribosomal protein S5 [Bartonella grahamii as4aup] L | 1 | 3e-63 |
>gi|315122801|ref|YP_004063290.1| 30S ribosomal protein S5 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 196 | Back alignment and organism information |
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Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 165/180 (91%), Positives = 177/180 (98%) Query: 1 MAQKERSQRDNWQNREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFA 60 MAQKERSQRDNWQNREERDNSI+DRIV+INRVSTALPGGRRFAFSVLVVVGDTKSK GFA Sbjct: 1 MAQKERSQRDNWQNREERDNSIIDRIVSINRVSTALPGGRRFAFSVLVVVGDTKSKAGFA 60 Query: 61 HSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAG 120 HSTAREVPEAVRKATEAAKRNM+S+SLLDGRTLHHDG+GRHGAGKV++RSAM GTGVIAG Sbjct: 61 HSTAREVPEAVRKATEAAKRNMVSISLLDGRTLHHDGLGRHGAGKVLIRSAMPGTGVIAG 120 Query: 121 GAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKHSLLQARR 180 GAIRAVCEVLG+HD+VAKSIGSSNPHNV+RATF+ LRSQSHPRD+ANRRGIKHSLLQARR Sbjct: 121 GAIRAVCEVLGVHDIVAKSIGSSNPHNVVRATFKALRSQSHPRDIANRRGIKHSLLQARR 180 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222148383|ref|YP_002549340.1| 30S ribosomal protein S5 [Agrobacterium vitis S4] Length = 189 | Back alignment and organism information |
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>gi|116251557|ref|YP_767395.1| 30S ribosomal protein S5 [Rhizobium leguminosarum bv. viciae 3841] Length = 189 | Back alignment and organism information |
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>gi|159184984|ref|NP_354907.2| 30S ribosomal protein S5 [Agrobacterium tumefaciens str. C58] Length = 189 | Back alignment and organism information |
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>gi|86357322|ref|YP_469214.1| 30S ribosomal protein S5 [Rhizobium etli CFN 42] Length = 189 | Back alignment and organism information |
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>gi|325293319|ref|YP_004279183.1| 30S ribosomal protein S5 [Agrobacterium sp. H13-3] Length = 189 | Back alignment and organism information |
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>gi|227821773|ref|YP_002825743.1| 30S ribosomal protein S5 [Sinorhizobium fredii NGR234] Length = 189 | Back alignment and organism information |
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>gi|15965126|ref|NP_385479.1| 30S ribosomal protein S5 [Sinorhizobium meliloti 1021] Length = 189 | Back alignment and organism information |
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>gi|49474387|ref|YP_032429.1| 30S ribosomal protein S5 [Bartonella quintana str. Toulouse] Length = 182 | Back alignment and organism information |
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>gi|240850818|ref|YP_002972218.1| 30S ribosomal protein S5 [Bartonella grahamii as4aup] Length = 182 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 199 | 30S ribosomal protein S5 [Candidatus Liberibacter asiat | ||
PRK00550 | 168 | PRK00550, rpsE, 30S ribosomal protein S5; Validated | 1e-61 | |
TIGR01021 | 154 | TIGR01021, rpsE_bact, ribosomal protein S5, bacterial/o | 6e-47 | |
KOG2646 | 396 | KOG2646, KOG2646, KOG2646, Ribosomal protein S5 [Transl | 1e-14 | |
PRK04044 | 211 | PRK04044, rps5p, 30S ribosomal protein S5P; Reviewed | 2e-13 | |
TIGR01020 | 212 | TIGR01020, rpsE_arch, ribosomal protein S5(archaeal typ | 8e-12 | |
KOG0877 | 213 | KOG0877, KOG0877, KOG0877, 40S ribosomal protein S2/30S | 4e-11 | |
PTZ00070 | 257 | PTZ00070, PTZ00070, 40S ribosomal protein S2; Provision | 7e-09 | |
COG0098 | 181 | COG0098, RpsE, Ribosomal protein S5 [Translation, ribos | 1e-49 | |
CHL00138 | 143 | CHL00138, rps5, ribosomal protein S5; Validated | 2e-25 | |
pfam03719 | 74 | pfam03719, Ribosomal_S5_C, Ribosomal protein S5, C-term | 4e-25 | |
pfam00333 | 67 | pfam00333, Ribosomal_S5, Ribosomal protein S5, N-termin | 1e-13 |
>gnl|CDD|179061 PRK00550, rpsE, 30S ribosomal protein S5; Validated | Back alignment and domain information |
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>gnl|CDD|130093 TIGR01021, rpsE_bact, ribosomal protein S5, bacterial/organelle type | Back alignment and domain information |
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>gnl|CDD|37857 KOG2646, KOG2646, KOG2646, Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|179727 PRK04044, rps5p, 30S ribosomal protein S5P; Reviewed | Back alignment and domain information |
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>gnl|CDD|162160 TIGR01020, rpsE_arch, ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type) | Back alignment and domain information |
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>gnl|CDD|36095 KOG0877, KOG0877, KOG0877, 40S ribosomal protein S2/30S ribosomal protein S5 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|185425 PTZ00070, PTZ00070, 40S ribosomal protein S2; Provisional | Back alignment and domain information |
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>gnl|CDD|30447 COG0098, RpsE, Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated | Back alignment and domain information |
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>gnl|CDD|146383 pfam03719, Ribosomal_S5_C, Ribosomal protein S5, C-terminal domain | Back alignment and domain information |
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>gnl|CDD|144065 pfam00333, Ribosomal_S5, Ribosomal protein S5, N-terminal domain | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 199 | 30S ribosomal protein S5 [Candidatus Liberibacter asiat | ||
TIGR01021 | 157 | rpsE_bact ribosomal protein S5; InterPro: IPR005712 Rib | 100.0 | |
COG0098 | 181 | RpsE Ribosomal protein S5 [Translation, ribosomal struc | 100.0 | |
PRK00550 | 156 | rpsE 30S ribosomal protein S5; Validated | 100.0 | |
PRK04044 | 211 | rps5p 30S ribosomal protein S5P; Reviewed | 100.0 | |
TIGR01020 | 220 | rpsE_arch ribosomal protein S5; InterPro: IPR005711 Rib | 100.0 | |
PTZ00070 | 261 | 40S ribosomal protein S2; Provisional | 100.0 | |
KOG2646 | 396 | consensus | 100.0 | |
KOG0877 | 213 | consensus | 99.97 | |
CHL00138 | 139 | rps5 ribosomal protein S5; Validated | 100.0 | |
pfam03719 | 74 | Ribosomal_S5_C Ribosomal protein S5, C-terminal domain. | 99.93 | |
pfam00333 | 67 | Ribosomal_S5 Ribosomal protein S5, N-terminal domain. | 99.9 |
>TIGR01021 rpsE_bact ribosomal protein S5; InterPro: IPR005712 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
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>COG0098 RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PRK00550 rpsE 30S ribosomal protein S5; Validated | Back alignment and domain information |
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>PRK04044 rps5p 30S ribosomal protein S5P; Reviewed | Back alignment and domain information |
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>TIGR01020 rpsE_arch ribosomal protein S5; InterPro: IPR005711 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
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>PTZ00070 40S ribosomal protein S2; Provisional | Back alignment and domain information |
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>KOG2646 consensus | Back alignment and domain information |
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>KOG0877 consensus | Back alignment and domain information |
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>CHL00138 rps5 ribosomal protein S5; Validated | Back alignment and domain information |
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>pfam03719 Ribosomal_S5_C Ribosomal protein S5, C-terminal domain | Back alignment and domain information |
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>pfam00333 Ribosomal_S5 Ribosomal protein S5, N-terminal domain | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 199 | 30S ribosomal protein S5 [Candidatus Liberibacter asiat | ||
1p6g_E | 166 | Real Space Refined Coordinates Of The 30s Subunit F | 6e-42 | |
1vs5_E | 167 | Crystal Structure Of The Bacterial Ribosome From Es | 7e-42 | |
3bbn_E | 308 | Homology Model For The Spinach Chloroplast 30s Subu | 2e-40 | |
3e1a_S | 159 | Structure Of The 30s Subunit And The Trnas Of E. Co | 3e-39 | |
3fih_E | 150 | Ternary Complex-Bound E.Coli 70s Ribosome. This Ent | 5e-39 | |
1qd7_D | 145 | Partial Model For 30s Ribosomal Subunit Length = 14 | 6e-39 | |
1eg0_B | 148 | Fitting Of Components With Known Structure Into An | 9e-39 | |
1pkp_A | 150 | The Structure Of Ribosomal Protein S5 Reveals Sites | 2e-38 | |
2gy9_E | 148 | Structure Of The 30s Subunit Of A Pre-Translocation | 6e-38 | |
1i94_E | 161 | Crystal Structures Of The Small Ribosomal Subunit W | 2e-34 | |
3ohc_E | 160 | Structure Of The Thermus Thermophilus Ribosome Comp | 2e-34 | |
1fka_E | 162 | Structure Of Functionally Activated Small Ribosomal | 3e-34 | |
3fic_E | 151 | T. Thermophilus 70s Ribosome In Complex With Mrna, | 4e-34 | |
1pns_E | 150 | Crystal Structure Of A Streptomycin Dependent Ribos | 4e-34 | |
2zkq_e | 179 | Structure Of A Mammalian Ribosomal 40s Subunit With | 7e-28 | |
3iz6_E | 274 | Localization Of The Small Subunit Ribosomal Protein | 3e-27 | |
3izb_E | 254 | Localization Of The Small Subunit Ribosomal Protein | 3e-24 | |
2xzm_E | 296 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 4e-24 | |
3jyv_E | 162 | Structure Of The 40s Rrna And Proteins And PE TRNA | 6e-23 | |
1s1h_E | 149 | Structure Of The Ribosomal 80s-Eef2-Sordarin Comple | 1e-21 |
>gi|33357882|pdb|1P6G|E Chain E, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 166 | Back alignment and structure |
Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 76/164 (46%), Positives = 111/164 (67%), Gaps = 1/164 (0%) Query: 16 EERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKAT 75 E++ + ++++A+NRVS + GGR F+F+ L VVGD +VGF + AREVP A++KA Sbjct: 4 EKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAM 63 Query: 76 EAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDV 135 E A+RNMI+V+L + TL H G H +V M+ A GTG+IAGGA+RAV EV G+H+V Sbjct: 64 EKARRNMINVAL-NNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNV 122 Query: 136 VAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKHSLLQAR 179 +AK+ GS+NP NV+RAT + L + + P VA +RG + + Sbjct: 123 LAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK 166 |
gi|116666552|pdb|1VS5|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 167 | Back alignment and structure |
gi|188036206|pdb|3BBN|E Chain E, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. Length = 308 | Back alignment and structure |
>gi|256032367|pdb|3E1A|S Chain S, Structure Of The 30s Subunit And The Trnas Of E. Coli Ribosome In Pre-Accommodation State Length = 159 | Back alignment and structure |
>gi|224510726|pdb|3FIH|E Chain E, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 150 | Back alignment and structure |
>gi|6137688|pdb|1QD7|D Chain D, Partial Model For 30s Ribosomal Subunit Length = 145 | Back alignment and structure |
>gi|157833512|pdb|1PKP|A Chain A, The Structure Of Ribosomal Protein S5 Reveals Sites Of Interaction With 16s Rrna Length = 150 | Back alignment and structure |
>gi|116667414|pdb|2GY9|E Chain E, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 148 | Back alignment and structure |
>gi|14278534|pdb|1I94|E Chain E, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 161 | Back alignment and structure |
>gi|309320341|pdb|3OHC|E Chain E, Structure Of The Thermus Thermophilus Ribosome Complexed With Erythromycin. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. Length = 160 | Back alignment and structure |
gi|10120568|pdb|1FKA|E Chain E, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 162 | Back alignment and structure |
>gi|224510687|pdb|3FIC|E Chain E, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 151 | Back alignment and structure |
>gi|34811533|pdb|1PNS|E Chain E, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 150 | Back alignment and structure |
>gi|187609259|pdb|2ZKQ|EE Chain e, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 179 | Back alignment and structure |
gi|313103632|pdb|3IZ6|E Chain E, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 274 | Back alignment and structure |
gi|313103668|pdb|3IZB|E Chain E, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 254 | Back alignment and structure |
gi|319443360|pdb|2XZM|E Chain E, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 296 | Back alignment and structure |
>gi|281500811|pdb|3JYV|E Chain E, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 162 | Back alignment and structure |
>gi|49258825|pdb|1S1H|E Chain E, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 149 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 199 | 30S ribosomal protein S5 [Candidatus Liberibacter asiat | ||
3bbn_E | 308 | Ribosomal protein S5; small ribosomal subunit, spinach | 4e-44 | |
3ofo_E | 150 | 30S ribosomal protein S5; protein biosynthesis, ribosom | 7e-38 | |
3i1m_E | 167 | 30S ribosomal protein S5; ribosome structure, protein-R | 7e-37 | |
1pkp_A | 150 | Ribosomal protein S5; 2.80A {Geobacillus stearothermoph | 6e-35 | |
3jyv_E | 162 | 40S ribosomal protein S2; eukaryotic ribosome, RACK1 pr | 1e-33 | |
2vqe_E | 162 | 30S ribosomal protein S5; tRNA-binding, rRNA-binding, m | 4e-33 | |
2zkq_e | 179 | 40S ribosomal protein S2E; protein-RNA complex, 40S rib | 1e-29 |
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 308 | Back alignment and structure |
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Score = 172 bits (437), Expect = 4e-44 Identities = 62/170 (36%), Positives = 96/170 (56%) Query: 3 QKERSQRDNWQNREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHS 62 K+ + + +E+ + + +V + RV+ + GG+ F +VVVGD K +VG Sbjct: 133 IKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVG 192 Query: 63 TAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGA 122 A+EV AV+KA A+RN+I+V + T H +GA +V++R A GTGVIAGGA Sbjct: 193 KAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGA 252 Query: 123 IRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIK 172 +R V E+ G+ + + K +GS+N N RAT +++ DVA RGI Sbjct: 253 VRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIP 302 |
>3ofo_E 30S ribosomal protein S5; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_E* 3iy8_E 2wwl_E 3ofp_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E 2qbh_E* 2qbj_E* 2qou_E* 2qow_E* ... Length = 150 | Back alignment and structure |
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>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E 2qbh_E* ... Length = 167 | Back alignment and structure |
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>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D Length = 150 | Back alignment and structure |
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>3jyv_E 40S ribosomal protein S2; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_E Length = 162 | Back alignment and structure |
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>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ... Length = 162 | Back alignment and structure |
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>2zkq_e 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 179 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 199 | 30S ribosomal protein S5 [Candidatus Liberibacter asiat | ||
3bbn_E | 308 | Ribosomal protein S5; small ribosomal subunit, spinach | 100.0 | |
2vqe_E | 162 | 30S ribosomal protein S5; tRNA-binding, rRNA-binding, m | 100.0 | |
3i1m_E | 167 | 30S ribosomal protein S5; ribosome structure, protein-R | 100.0 | |
1pkp_A | 150 | Ribosomal protein S5; 2.80A {Geobacillus stearothermoph | 100.0 | |
3ofo_E | 150 | 30S ribosomal protein S5; protein biosynthesis, ribosom | 100.0 | |
2zkq_e | 179 | 40S ribosomal protein S2E; protein-RNA complex, 40S rib | 100.0 | |
3jyv_E | 162 | 40S ribosomal protein S2; eukaryotic ribosome, RACK1 pr | 100.0 |
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=400.89 Aligned_cols=167 Identities=37% Similarity=0.575 Sum_probs=160.8 Q ss_pred HHHHHCCCCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCC Q ss_conf 12210000116021000022444012787384679999980899838997047442478999999999630125220166 Q gi|254780244|r 11 NWQNREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDG 90 (199) Q Consensus 11 ~~~~~~~~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~ 90 (199) ...+++...++|+|+||+|+||+|||+|||++||+|||+|||+||+||||+|||.|+++||+||+++|++||++|+++++ T Consensus 141 ~~~r~~~~~~ef~EkVV~I~RV~KvTKGGR~~sFrALVVVGNgnG~VG~G~GKA~EV~~AIrKA~~~AKkNLi~V~~~~~ 220 (308) T 3bbn_E 141 SKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKY 220 (308) T ss_dssp ----------CCEEEEEEEECCEEEETTEEEECCEEEEEEECSSSEEEEEEEECSSHHHHHHHHHHTTTTSCEECCCCSS T ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHCEEEEECCCC T ss_conf 64324454567001777585112240588715789999995799968678771566899999999999714898857679 Q ss_pred CCCCEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCC Q ss_conf 87620011033767999963675448503048999999809441004546898888999999999950699899998619 Q gi|254780244|r 91 RTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRG 170 (199) Q Consensus 91 ~TI~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~t~~~iA~~RG 170 (199) |||||++.+|||+++|+|+|||+|+||+||+.++.||+++||+||++|++||+|++|+++|||+||.+++|+++||+.|| T Consensus 221 ~TIPh~V~gK~gstkV~LkPAP~GTGIiAg~~vR~ILelAGIkDv~tKs~GS~N~lNvvKATf~AL~~lrS~eeIA~~RG 300 (308) T 3bbn_E 221 LTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRG 300 (308) T ss_dssp SBCSSCEEEEETTEEEEEEECCTTCCEECCTTTHHHHTTTTCCBEEEEEEECCCTTTTTTHHHHHHHTCCCHHHHHTTSC T ss_pred CCCCEEEEEEECCEEEEEECCCCCCCEECCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHC T ss_conf 86785777787425999835998989743809999999679472777767788788899999999983699999999849 Q ss_pred CCHHHHH Q ss_conf 9798944 Q gi|254780244|r 171 IKHSLLQ 177 (199) Q Consensus 171 ~~i~~~~ 177 (199) ++++|+. T Consensus 301 k~i~EL~ 307 (308) T 3bbn_E 301 IPMEELW 307 (308) T ss_dssp CCSCCCC T ss_pred CCHHHHC T ss_conf 9678863 |
>2vqe_E 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1fka_E 1gix_H* 1hnw_E* 1hnx_E* 1hnz_E* 1hr0_E 1ibk_E* 1ibl_E* 1ibm_E 1jgo_H* 1jgp_H* 1jgq_H* 1ml5_H* 1xmo_E* 1xmq_E* 1xnq_E* 1xnr_E* 1yl4_H 2b64_E* 2b9m_E* ... | Back alignment and structure |
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>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3kc4_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E ... | Back alignment and structure |
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>1pkp_A Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} SCOP: d.14.1.1 d.50.1.2 PDB: 1eg0_B 1dv4_E* 1qd7_D | Back alignment and structure |
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>3ofo_E 30S ribosomal protein S5; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_E* 3iy8_E 2wwl_E 3ofp_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E 2qbh_E* 2qbj_E* 2qou_E* 2qow_E* ... | Back alignment and structure |
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>2zkq_e 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} | Back alignment and structure |
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>3jyv_E 40S ribosomal protein S2; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_E | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
199 | 30S ribosomal protein S5 [Candidatus Liberibacter asiat | |||
d2qale1 | 81 | d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal do | 5e-24 | |
d2uube1 | 81 | d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal do | 1e-21 | |
d1pkpa1 | 71 | d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal do | 4e-21 | |
d2uube2 | 69 | d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal doma | 2e-17 | |
d1pkpa2 | 74 | d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal doma | 2e-16 | |
d2qale2 | 69 | d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal doma | 3e-16 |
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 81 | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Ribosomal protein S5, C-terminal domain species: Escherichia coli [TaxId: 562] Score = 104 bits (262), Expect = 5e-24 Identities = 41/79 (51%), Positives = 55/79 (69%) Query: 92 TLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRA 151 TL H G H +V M+ A GTG+IAGGA+RAV EV G+H+V+AK+ GS+NP NV+RA Sbjct: 2 TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRA 61 Query: 152 TFEVLRSQSHPRDVANRRG 170 T + L + + P VA +RG Sbjct: 62 TIDGLENMNSPEMVAAKRG 80 |
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 81 | Back information, alignment and structure |
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>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 71 | Back information, alignment and structure |
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>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 69 | Back information, alignment and structure |
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>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 74 | Back information, alignment and structure |
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>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 69 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 199 | 30S ribosomal protein S5 [Candidatus Liberibacter asiat | ||
d2qale1 | 81 | Ribosomal protein S5, C-terminal domain {Escherichia co | 99.96 | |
d2uube1 | 81 | Ribosomal protein S5, C-terminal domain {Thermus thermo | 99.96 | |
d1pkpa1 | 71 | Ribosomal protein S5, C-terminal domain {Bacillus stear | 99.93 | |
d2uube2 | 69 | Ribosomal S5 protein, N-terminal domain {Thermus thermo | 99.9 | |
d1pkpa2 | 74 | Ribosomal S5 protein, N-terminal domain {Bacillus stear | 99.89 | |
d2qale2 | 69 | Ribosomal S5 protein, N-terminal domain {Escherichia co | 99.89 |
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Translational machinery components domain: Ribosomal protein S5, C-terminal domain species: Escherichia coli [TaxId: 562] Probab=99.96 E-value=1.7e-30 Score=203.53 Aligned_cols=80 Identities=51% Similarity=0.773 Sum_probs=79.4 Q ss_pred CCCEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCC Q ss_conf 76200110337679999636754485030489999998094410045468988889999999999506998999986199 Q gi|254780244|r 92 TLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGI 171 (199) Q Consensus 92 TI~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~t~~~iA~~RG~ 171 (199) ||||++++||++++|+|+|||+|+||+||+.+|.|||++||+|+++|++||+||+|+++|||+||++++||+|+|+.||+ T Consensus 2 TIph~v~gk~gs~kV~l~PAp~GtGliag~~vr~ilelaGI~Dv~~K~~GS~n~~N~vkAt~~aL~~~~t~~~iA~~RGk 81 (81) T d2qale1 2 TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGK 81 (81) T ss_dssp BCSSCBCCEETTEEEEBCBCCTTSCEECCHHHHHHHHHHTCCSEECEEEECCCHHHHHHHHHHHHTTCCCHHHHHHHTTC T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCC T ss_conf 61278899989699999978999841347799999998296626767589997899999999999818999999998286 |
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 199 | 30S ribosomal protein S5 [Candidatus Liberibacter | ||
3i1m_E_ | 167 | (E:) 30S ribosomal protein S5; ribosome structure, | 8e-34 | |
2vqe_E_1-143 | 143 | (E:1-143) 30S ribosomal protein S5; tRNA-binding, | 6e-30 | |
2zkq_e_82-179 | 98 | (e:82-179) 40S ribosomal protein S2E; protein-RNA | 1e-19 | |
3jyv_E_75-162 | 88 | (E:75-162) 40S ribosomal protein S2; eukaryotic ri | 2e-18 | |
3bbn_E_221-289 | 69 | (E:221-289) Ribosomal protein S5; small ribosomal | 2e-18 | |
1pkp_A_79-150 | 72 | (A:79-150) Ribosomal protein S5; 2.80A {Geobacillu | 2e-18 | |
1pkp_A_1-78 | 78 | (A:1-78) Ribosomal protein S5; 2.80A {Geobacillus | 6e-16 | |
3bbn_E_1-220 | 220 | (E:1-220) Ribosomal protein S5; small ribosomal su | 7e-14 | |
3jyv_E_1-74 | 74 | (E:1-74) 40S ribosomal protein S2; eukaryotic ribo | 2e-12 | |
2zkq_e_1-81 | 81 | (e:1-81) 40S ribosomal protein S2E; protein-RNA co | 3e-11 |
>3i1m_E (E:) 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E 2qbh_E* ...Length = 167 | Back alignment and structure |
---|
Score = 137 bits (347), Expect = 8e-34 Identities = 76/159 (47%), Positives = 109/159 (68%), Gaps = 1/159 (0%) Query: 14 NREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRK 73 + E++ + ++++A+NRVS + GGR F+F+ L VVGD +VGF + AREVP A++K Sbjct: 3 HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQK 62 Query: 74 ATEAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMH 133 A E A+RNMI+V L+ TL H G H +V M+ A GTG+IAGGA+RAV EV G+H Sbjct: 63 AMEKARRNMINV-ALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVH 121 Query: 134 DVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIK 172 +V+AK+ GS+NP NV+RAT + L + + P VA +RG Sbjct: 122 NVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS 160 |
>2vqe_E (E:1-143) 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus}Length = 143 | Back alignment and structure |
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>2zkq_e (e:82-179) 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}Length = 98 | Back alignment and structure |
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>3jyv_E (E:75-162) 40S ribosomal protein S2; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_ELength = 88 | Back alignment and structure |
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>3bbn_E (E:221-289) Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 69 | Back alignment and structure |
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>1pkp_A (A:79-150) Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus}Length = 72 | Back alignment and structure |
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>1pkp_A (A:1-78) Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus}Length = 78 | Back alignment and structure |
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>3bbn_E (E:1-220) Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 220 | Back alignment and structure |
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>3jyv_E (E:1-74) 40S ribosomal protein S2; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_ELength = 74 | Back alignment and structure |
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>2zkq_e (e:1-81) 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}Length = 81 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 199 | 30S ribosomal protein S5 [Candidatus Liberibacter asiat | ||
3i1m_E_ | 167 | 30S ribosomal protein S5; ribosome structure, prot | 100.0 | |
2vqe_E_1-143 | 143 | 30S ribosomal protein S5; tRNA-binding, rRNA-bindi | 100.0 | |
2zkq_e_82-179 | 98 | 40S ribosomal protein S2E; protein-RNA complex, 40 | 99.96 | |
3jyv_E_75-162 | 88 | 40S ribosomal protein S2; eukaryotic ribosome, RAC | 99.93 | |
1pkp_A_79-150 | 72 | Ribosomal protein S5; 2.80A {Geobacillus stearothe | 99.92 | |
3bbn_E_221-289 | 69 | Ribosomal protein S5; small ribosomal subunit, spi | 99.9 | |
3bbn_E_1-220 | 220 | Ribosomal protein S5; small ribosomal subunit, spi | 99.91 | |
3jyv_E_1-74 | 74 | 40S ribosomal protein S2; eukaryotic ribosome, RAC | 99.9 | |
1pkp_A_1-78 | 78 | Ribosomal protein S5; 2.80A {Geobacillus stearothe | 99.9 | |
2zkq_e_1-81 | 81 | 40S ribosomal protein S2E; protein-RNA complex, 40 | 99.89 |
>3i1m_E (E:) 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E 2qbh_E* ... | Back alignment and structure |
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Probab=100.00 E-value=0 Score=374.43 Aligned_cols=164 Identities=46% Similarity=0.735 Sum_probs=159.5 Q ss_pred HHCCCCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCCCCC Q ss_conf 10000116021000022444012787384679999980899838997047442478999999999630125220166876 Q gi|254780244|r 14 NREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDGRTL 93 (199) Q Consensus 14 ~~~~~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~~TI 93 (199) +.|...++|+|+||+|+||+|||++||++||+|||+|||+||++|||.|||.|+++|++||..+|++||++||+.+ +|| T Consensus 3 ~~d~~~~~l~~~vl~i~rV~k~T~~Gr~~~f~alvvvGn~nG~vG~G~gka~ev~~Ai~kA~~~A~~nl~~V~~~~-~Ti 81 (167) T 3i1m_E 3 HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNN-GTL 81 (167) T ss_dssp -------CCCEEEEEEEEEECCBTTBCCEEEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSEECCCCBT-TBC T ss_pred CCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHEEEECCC-CCC T ss_conf 5013455600178988524457058862168999999679987875111176589999999999985412551335-623 Q ss_pred CEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCH Q ss_conf 20011033767999963675448503048999999809441004546898888999999999950699899998619979 Q gi|254780244|r 94 HHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKH 173 (199) Q Consensus 94 ~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~t~~~iA~~RG~~i 173 (199) ||+++++|++++|+|+|||+|+||+||+.+++||+++||+|+++|++||+||+|+++|||+||++++||+++|+.||+++ T Consensus 82 ~~~v~gk~~~~~v~l~pap~G~Gl~~~~~i~~il~laGI~dv~~K~~Gs~n~~n~vkA~~~aL~~~~t~~~ia~~rg~~~ 161 (167) T 3i1m_E 82 QHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSV 161 (167) T ss_dssp SSCEEEEETTEEEEEECCCCSSSCBCCSSSSSHHHHHTCCSCEEEEEECCCHHHHHHHTHHHHHSCCCSTTTTTTTTC-- T ss_pred CCCCCEEECCCEEEEEECCCCCCEEECHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCH T ss_conf 24464355362379972479865078747777888816010212115789788999999999983899999999809969 Q ss_pred HHHHH Q ss_conf 89445 Q gi|254780244|r 174 SLLQA 178 (199) Q Consensus 174 ~~~~~ 178 (199) +|+.. T Consensus 162 ~e~~~ 166 (167) T 3i1m_E 162 EEILG 166 (167) T ss_dssp ----- T ss_pred HHHCC T ss_conf 99617 |
>2vqe_E (E:1-143) 30S ribosomal protein S5; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} | Back alignment and structure |
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>2zkq_e (e:82-179) 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} | Back alignment and structure |
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>3jyv_E (E:75-162) 40S ribosomal protein S2; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_E | Back alignment and structure |
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>1pkp_A (A:79-150) Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} | Back alignment and structure |
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>3bbn_E (E:221-289) Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
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>3bbn_E (E:1-220) Ribosomal protein S5; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
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>3jyv_E (E:1-74) 40S ribosomal protein S2; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_E | Back alignment and structure |
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>1pkp_A (A:1-78) Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus} | Back alignment and structure |
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>2zkq_e (e:1-81) 40S ribosomal protein S2E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} | Back alignment and structure |
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