HHsearch alignment for GI: 254780244 and conserved domain: CHL00138
>CHL00138 rps5 ribosomal protein S5; Validated.
Probab=100.00 E-value=0 Score=311.38 Aligned_cols=127 Identities=39% Similarity=0.692 Sum_probs=124.2
Q ss_pred HCCCCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCC
Q ss_conf 00001160210000224440127873846799999808998389970474424789999999996301252201668762
Q gi|254780244|r 15 REERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDGRTLH 94 (199)
Q Consensus 15 ~~~~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~~TI~ 94 (199)
T Consensus 13 ~~~~~~~~~e~vi~i~rV~k~tkgGr~~~f~alVvVGn~~G~vG~G~gKa~ev~~AI~KA~~~Akknl~~V~~~~~~TIp 92 (139)
T CHL00138 13 LIEQENKWEERVIQIKRVSKVVKGGKKLSFRAIVVIGNENGWVGVGVGKASDVQGAVKKAVTDAKKNIINIPLTKSNSIP 92 (139)
T ss_pred CHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHCEEEEECCCCCEEE
T ss_conf 20130573068898985543622893667999999977999798878853419999999999996269999812896488
Q ss_pred EECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECC
Q ss_conf 00110337679999636754485030489999998094410045468
Q gi|254780244|r 95 HDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIG 141 (199)
Q Consensus 95 h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~G 141 (199)
T Consensus 93 h~v~gk~gs~~V~l~Pap~G~Gliag~~ir~ilelaGIkDv~~K~~G 139 (139)
T CHL00138 93 HNITGIFGAAKVILRPSAPGSGVIAGGSIRTVLELAGIKNILAKQLG 139 (139)
T ss_pred EEEEEEECCEEEEEEECCCCCCEECCHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999986389999989999868858099999997695305466259