HHsearch alignment for GI: 254780244 and conserved domain: PRK00550

>PRK00550 rpsE 30S ribosomal protein S5; Validated.
Probab=100.00  E-value=0  Score=388.60  Aligned_cols=154  Identities=57%  Similarity=0.926  Sum_probs=151.5

Q ss_pred             CCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCEECC
Q ss_conf             11602100002244401278738467999998089983899704744247899999999963012522016687620011
Q gi|254780244|r   19 DNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGV   98 (199)
Q Consensus        19 ~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~~TI~h~v~   98 (199)
T Consensus         3 ~~~~~e~vi~i~rv~k~tkgGr~~~f~alvvvGn~nG~vG~G~gKa~ev~~Ai~kA~~~Ak~nl~~V~~~-~~Tiph~v~   81 (156)
T PRK00550          3 EDELEEKLVAINRVTKVVKGGRRFSFSALVVVGDGKGRVGFGYGKAREVPEAIRKAVEAAKKNMIKVPLV-GGTIPHEVK   81 (156)
T ss_pred             CCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEC-CCEEEEEEE
T ss_conf             6560126898862347864983577899999987998297756607668999999999997378999913-998988898


Q ss_pred             CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCH
Q ss_conf             033767999963675448503048999999809441004546898888999999999950699899998619979
Q gi|254780244|r   99 GRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKH  173 (199)
Q Consensus        99 gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~t~~~iA~~RG~~i  173 (199)
T Consensus        82 gk~~~~kV~l~Pap~G~Gl~a~~~~r~vl~laGI~d~~~K~~Gs~n~~NvvkA~~~aL~~~~t~~~iA~~rG~~~  156 (156)
T PRK00550         82 GKHGAAKVLLKPASEGTGVIAGGAMRAVLELAGVHDVLAKSLGSNNPINVVRATFDALKKLRTPEEVAAKRGKSV  156 (156)
T ss_pred             EEECCEEEEEEECCCCCCEECCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             898638999996799955783879999999759160576716899788999999999981899999999848989