HHsearch alignment for GI: 254780244 and conserved domain: PRK00550
>PRK00550 rpsE 30S ribosomal protein S5; Validated.
Probab=100.00 E-value=0 Score=388.60 Aligned_cols=154 Identities=57% Similarity=0.926 Sum_probs=151.5
Q ss_pred CCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCEECC
Q ss_conf 11602100002244401278738467999998089983899704744247899999999963012522016687620011
Q gi|254780244|r 19 DNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGV 98 (199)
Q Consensus 19 ~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~~TI~h~v~ 98 (199)
T Consensus 3 ~~~~~e~vi~i~rv~k~tkgGr~~~f~alvvvGn~nG~vG~G~gKa~ev~~Ai~kA~~~Ak~nl~~V~~~-~~Tiph~v~ 81 (156)
T PRK00550 3 EDELEEKLVAINRVTKVVKGGRRFSFSALVVVGDGKGRVGFGYGKAREVPEAIRKAVEAAKKNMIKVPLV-GGTIPHEVK 81 (156)
T ss_pred CCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEC-CCEEEEEEE
T ss_conf 6560126898862347864983577899999987998297756607668999999999997378999913-998988898
Q ss_pred CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCH
Q ss_conf 033767999963675448503048999999809441004546898888999999999950699899998619979
Q gi|254780244|r 99 GRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKH 173 (199)
Q Consensus 99 gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~t~~~iA~~RG~~i 173 (199)
T Consensus 82 gk~~~~kV~l~Pap~G~Gl~a~~~~r~vl~laGI~d~~~K~~Gs~n~~NvvkA~~~aL~~~~t~~~iA~~rG~~~ 156 (156)
T PRK00550 82 GKHGAAKVLLKPASEGTGVIAGGAMRAVLELAGVHDVLAKSLGSNNPINVVRATFDALKKLRTPEEVAAKRGKSV 156 (156)
T ss_pred EEECCEEEEEEECCCCCCEECCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 898638999996799955783879999999759160576716899788999999999981899999999848989