HHsearch alignment of GI: 254780244 and MMDB domain: 1pkp_A_1-78

>1pkp_A (A:1-78) Ribosomal protein S5; 2.80A {Geobacillus stearothermophilus}
Probab=99.90  E-value=6.4e-24  Score=165.79  Aligned_cols=75  Identities=48%  Similarity=0.789  Sum_probs=72.1

Q ss_pred             HHCCCCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECC
Q ss_conf             100001160210000224440127873846799999808998389970474424789999999996301252201
Q gi|254780244|r   14 NREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLL   88 (199)
Q Consensus        14 ~~~~~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~   88 (199)
                      ..+...++|+|++|+|+||||||++||++||+|||+|||+||+||||.|||.|+++||+||.++|++||++||+.
T Consensus         3 ~~d~~~~~l~~~vl~i~rV~k~tk~Gr~~~f~alvvvGn~~G~vG~G~gKa~ev~~Ai~kA~~~Ak~nl~~V~l~   77 (78)
T 1pkp_A            3 RINPNKLELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEVPIV   77 (78)
T ss_dssp             -CCGGGSCCEEEEEEEECSSSBCSSCCSSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSCEECCCB
T ss_pred             CCCCCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHCEEEEECC
T ss_conf             557775762068999965545840883478999999966998786605635667999999999998261388212