HHsearch alignment of GI: 254780244 and MMDB domain: 3i1m_E_
>3i1m_E (E:) 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E 2qbh_E* ...
Probab=100.00 E-value=0 Score=374.43 Aligned_cols=164 Identities=46% Similarity=0.735 Sum_probs=159.5
Q ss_pred HHCCCCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCCCCC
Q ss_conf 10000116021000022444012787384679999980899838997047442478999999999630125220166876
Q gi|254780244|r 14 NREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDGRTL 93 (199)
Q Consensus 14 ~~~~~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~~TI 93 (199)
+.|...++|+|+||+|+||+|||++||++||+|||+|||+||++|||.|||.|+++|++||..+|++||++||+.+ +||
T Consensus 3 ~~d~~~~~l~~~vl~i~rV~k~T~~Gr~~~f~alvvvGn~nG~vG~G~gka~ev~~Ai~kA~~~A~~nl~~V~~~~-~Ti 81 (167)
T 3i1m_E 3 HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNN-GTL 81 (167)
T ss_dssp -------CCCEEEEEEEEEECCBTTBCCEEEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSEECCCCBT-TBC
T ss_pred CCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHEEEECCC-CCC
T ss_conf 5013455600178988524457058862168999999679987875111176589999999999985412551335-623
Q ss_pred CEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCH
Q ss_conf 20011033767999963675448503048999999809441004546898888999999999950699899998619979
Q gi|254780244|r 94 HHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKH 173 (199)
Q Consensus 94 ~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~t~~~iA~~RG~~i 173 (199)
||+++++|++++|+|+|||+|+||+||+.+++||+++||+|+++|++||+||+|+++|||+||++++||+++|+.||+++
T Consensus 82 ~~~v~gk~~~~~v~l~pap~G~Gl~~~~~i~~il~laGI~dv~~K~~Gs~n~~n~vkA~~~aL~~~~t~~~ia~~rg~~~ 161 (167)
T 3i1m_E 82 QHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSV 161 (167)
T ss_dssp SSCEEEEETTEEEEEECCCCSSSCBCCSSSSSHHHHHTCCSCEEEEEECCCHHHHHHHTHHHHHSCCCSTTTTTTTTC--
T ss_pred CCCCCEEECCCEEEEEECCCCCCEEECHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf 24464355362379972479865078747777888816010212115789788999999999983899999999809969
Q ss_pred HHHHH
Q ss_conf 89445
Q gi|254780244|r 174 SLLQA 178 (199)
Q Consensus 174 ~~~~~ 178 (199)
+|+..
T Consensus 162 ~e~~~ 166 (167)
T 3i1m_E 162 EEILG 166 (167)
T ss_dssp -----
T ss_pred HHHCC
T ss_conf 99617