HHsearch results for GI: 254780244 and protein with PDBid: 3i1m_E
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E 3i1z_E 3i21_E 3kc4_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E 2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E ...
Probab=100.00 E-value=0 Score=380.76 Aligned_cols=163 Identities=47% Similarity=0.737 Sum_probs=157.9
Q ss_pred HCCCCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCC
Q ss_conf 00001160210000224440127873846799999808998389970474424789999999996301252201668762
Q gi|254780244|r 15 REERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDGRTLH 94 (199)
Q Consensus 15 ~~~~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~~TI~ 94 (199)
.+...+||+|+||+|+||+|||++||++||+|||+|||+||+||||+|||+|+++||+||.++|++||++|++++ +|||
T Consensus 4 ~~~~~~~l~e~vl~i~rV~k~tk~Gr~~~f~alVvvGn~~G~vG~G~gKa~ev~~Ai~kA~~~Akknl~~v~~~~-~Ti~ 82 (167)
T 3i1m_E 4 IEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNN-GTLQ 82 (167)
T ss_dssp ------CCCEEEEEEEEEECCBTTBCCEEEEEEEEEECSSSCEEEECCEESSHHHHHHHHHHHHHSSEECCCCBT-TBCS
T ss_pred CCCCCCCHHHEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCEECCCHHHHHHHHHHHHHHHHHHHHHCC-CCCC
T ss_conf 002443500158878311145058854678999999779986752113158779999999999998168766138-8757
Q ss_pred EECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHH
Q ss_conf 00110337679999636754485030489999998094410045468988889999999999506998999986199798
Q gi|254780244|r 95 HDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKHS 174 (199)
Q Consensus 95 h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~t~~~iA~~RG~~i~ 174 (199)
|++.++|++++|+|+|||+||||+||+.++.||+++||+||++|++||+||+|+++|||+||++++||+++|+.||++++
T Consensus 83 ~~v~gk~~~~kv~l~Pap~GtGi~a~~~~r~il~laGI~Di~~K~~Gs~n~~N~vkA~~~aL~~~~s~~~ia~~rG~~~~ 162 (167)
T 3i1m_E 83 HPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVE 162 (167)
T ss_dssp SCEEEEETTEEEEEECCCCSSSCBCCSSSSSHHHHHTCCSCEEEEEECCCHHHHHHHTHHHHHSCCCSTTTTTTTTC---
T ss_pred CCCCCEEECCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHH
T ss_conf 66564150238999858999886017899999998076640000779996899999999999838999999998099699
Q ss_pred HHHH
Q ss_conf 9445
Q gi|254780244|r 175 LLQA 178 (199)
Q Consensus 175 ~~~~ 178 (199)
|+..
T Consensus 163 e~~~ 166 (167)
T 3i1m_E 163 EILG 166 (167)
T ss_dssp ----
T ss_pred HHCC
T ss_conf 9618