HHSEARCH alignment of GI: 254780244 and SCOP domain: d1pkpa1

Alignment
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.93  E-value=6e-27  Score=181.88  Aligned_cols=71  Identities=49%  Similarity=0.858  Sum_probs=69.7

Q ss_pred             CCCCCEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf             68762001103376799996367544850304899999980944100454689888899999999995069
Q gi|254780244|r   90 GRTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQS  160 (199)
Q Consensus        90 ~~TI~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~  160 (199)
                      |+||||++++||++++|+|+|||+|+||+|++.++.|||++||+|+++|++||+||+|+++|||+||++|+
T Consensus         1 G~TIph~v~gk~gs~~V~l~PAp~GtGliag~~vr~il~laGIkDv~aK~~Gs~n~~N~~kAt~~aL~~l~   71 (71)
T d1pkpa1           1 GTTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATFDGLKQLK   71 (71)
T ss_dssp             TTBCSSCEEEEETTEEEEEEECCTTCCEESCHHHHHHHHHHTCCSEEEEECSCCSHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEEEEEECEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             97041789999880999999789998531577999999982845224333778978999999999998569


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S5, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]