Query gi|254780244|ref|YP_003064657.1| 30S ribosomal protein S5 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 199
No_of_seqs 117 out of 919
Neff 5.0
Searched_HMMs 13730
Date Tue May 24 03:15:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780244.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qale1 d.14.1.1 (E:78-158) Ri 100.0 1.7E-30 1.2E-34 203.5 7.8 80 92-171 2-81 (81)
2 d2uube1 d.14.1.1 (E:74-154) Ri 100.0 7E-30 5.1E-34 199.7 8.4 79 91-169 1-79 (81)
3 d1pkpa1 d.14.1.1 (A:78-148) Ri 99.9 6E-27 4.4E-31 181.9 8.1 71 90-160 1-71 (71)
4 d2uube2 d.50.1.2 (E:5-73) Ribo 99.9 1.3E-24 9.5E-29 167.6 7.9 69 21-89 1-69 (69)
5 d1pkpa2 d.50.1.2 (A:4-77) Ribo 99.9 3.7E-24 2.7E-28 164.9 7.0 72 17-88 3-74 (74)
6 d2qale2 d.50.1.2 (E:9-77) Ribo 99.9 2.1E-24 1.5E-28 166.4 5.7 69 21-89 1-69 (69)
7 d1whqa_ d.50.1.1 (A:) ATP-depe 64.5 3.9 0.00028 18.4 4.0 54 41-97 35-88 (99)
8 d1p42a1 d.14.1.7 (A:2-127) UDP 56.7 2.7 0.0002 19.4 2.0 16 104-119 23-38 (120)
9 d1o0wa2 d.50.1.1 (A:168-236) R 56.6 5 0.00037 17.7 3.4 41 39-83 29-69 (69)
10 d2b7ta1 d.50.1.1 (A:1-73) dsRN 50.4 5.2 0.00038 17.7 2.7 40 42-86 34-73 (73)
11 d2dixa1 d.50.1.1 (A:7-79) Inte 47.1 8.1 0.00059 16.5 4.7 47 32-83 23-69 (73)
12 d2pifa1 d.382.1.1 (A:7-262) Un 45.8 6.7 0.00049 17.0 2.7 84 53-143 108-212 (256)
13 d1x49a1 d.50.1.1 (A:8-92) dsRN 44.7 7.1 0.00052 16.8 2.6 53 35-91 31-83 (85)
14 d1di2a_ d.50.1.1 (A:) Double-s 41.4 9.9 0.00072 15.9 4.5 44 35-83 25-68 (69)
15 d1bf4a_ b.34.13.1 (A:) DNA-bin 40.2 10 0.00074 15.9 2.9 46 23-72 10-55 (63)
16 d1x48a1 d.50.1.1 (A:8-83) dsRN 38.9 11 0.00079 15.7 3.8 43 39-85 26-68 (76)
17 d2nuga2 d.50.1.1 (A:151-218) R 35.2 12 0.00091 15.3 4.5 44 34-82 24-67 (68)
18 d1uhza_ d.50.1.1 (A:) staufen 33.1 13 0.00098 15.1 4.6 42 37-83 33-74 (89)
19 d1qu6a1 d.50.1.1 (A:1-90) dsRN 32.9 14 0.00099 15.1 3.4 46 35-84 37-82 (90)
20 d1w5fa2 d.79.2.1 (A:216-336) C 32.2 9.2 0.00067 16.1 1.6 24 53-76 19-43 (121)
21 d2vapa2 d.79.2.1 (A:232-354) C 27.8 14 0.001 15.1 1.9 24 53-76 16-40 (123)
22 d1x47a1 d.50.1.1 (A:8-92) Dgcr 27.3 17 0.0012 14.5 4.4 41 39-83 36-76 (85)
23 d2b7va1 d.50.1.1 (A:1-71) dsRN 23.0 20 0.0015 14.0 2.8 42 39-85 28-69 (71)
24 d1u7na_ c.77.1.4 (A:) Fatty ac 22.7 21 0.0015 14.0 3.2 32 129-160 286-317 (329)
No 1
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=1.7e-30 Score=203.53 Aligned_cols=80 Identities=51% Similarity=0.773 Sum_probs=79.4
Q ss_pred CCCEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 76200110337679999636754485030489999998094410045468988889999999999506998999986199
Q gi|254780244|r 92 TLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGI 171 (199)
Q Consensus 92 TI~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~t~~~iA~~RG~ 171 (199)
||||++++||++++|+|+|||+|+||+||+.+|.|||++||+|+++|++||+||+|+++|||+||++++||+|+|+.||+
T Consensus 2 TIph~v~gk~gs~kV~l~PAp~GtGliag~~vr~ilelaGI~Dv~~K~~GS~n~~N~vkAt~~aL~~~~t~~~iA~~RGk 81 (81)
T d2qale1 2 TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGK 81 (81)
T ss_dssp BCSSCBCCEETTEEEEBCBCCTTSCEECCHHHHHHHHHHTCCSEECEEEECCCHHHHHHHHHHHHTTCCCHHHHHHHTTC
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 61278899989699999978999841347799999998296626767589997899999999999818999999998286
No 2
>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.96 E-value=7e-30 Score=199.75 Aligned_cols=79 Identities=41% Similarity=0.614 Sum_probs=77.2
Q ss_pred CCCCEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 8762001103376799996367544850304899999980944100454689888899999999995069989999861
Q gi|254780244|r 91 RTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRR 169 (199)
Q Consensus 91 ~TI~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~t~~~iA~~R 169 (199)
.||||++++||++++|+|+|||+|+||+||+.+|.|||++||+|+++|++||+||+|+++|||+||++++||+|+|+.|
T Consensus 1 gTIph~v~gk~gs~kV~l~PAp~GtGliag~~vr~ilelaGIkDi~~K~~GS~N~~N~vkAt~~aL~~~~t~~~va~~R 79 (81)
T d2uube1 1 GTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR 79 (81)
T ss_dssp TBCSSCEEEEETTEEEEEEECCTTCCEECCHHHHHHHHHTTCCSEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred CCCCEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 9502589999873899999789998612457999999980821541204899978999999999999279999999760
No 3
>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.93 E-value=6e-27 Score=181.88 Aligned_cols=71 Identities=49% Similarity=0.858 Sum_probs=69.7
Q ss_pred CCCCCEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 68762001103376799996367544850304899999980944100454689888899999999995069
Q gi|254780244|r 90 GRTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQS 160 (199)
Q Consensus 90 ~~TI~h~v~gk~g~~kV~l~Pap~G~Gi~a~~~vr~il~laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~ 160 (199)
|+||||++++||++++|+|+|||+|+||+|++.++.|||++||+|+++|++||+||+|+++|||+||++|+
T Consensus 1 G~TIph~v~gk~gs~~V~l~PAp~GtGliag~~vr~il~laGIkDv~aK~~Gs~n~~N~~kAt~~aL~~l~ 71 (71)
T d1pkpa1 1 GTTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATFDGLKQLK 71 (71)
T ss_dssp TTBCSSCEEEEETTEEEEEEECCTTCCEESCHHHHHHHHHHTCCSEEEEECSCCSHHHHHHHHHHHHHHCC
T ss_pred CCEEEEEEEEEECEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 97041789999880999999789998531577999999982845224333778978999999999998569
No 4
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.90 E-value=1.3e-24 Score=167.62 Aligned_cols=69 Identities=43% Similarity=0.707 Sum_probs=67.6
Q ss_pred CCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCC
Q ss_conf 602100002244401278738467999998089983899704744247899999999963012522016
Q gi|254780244|r 21 SIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLD 89 (199)
Q Consensus 21 ~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~ 89 (199)
||+|+||+|+||+|||++||++||+|||+|||+||+||||+|||.|+++||+||..+|++||++||+.+
T Consensus 1 d~~e~vv~i~rV~k~tk~Gr~~~f~alvvvGn~~G~vG~G~gKa~ev~~Ai~KA~~~Ak~nm~~Vpl~n 69 (69)
T d2uube2 1 DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQN 69 (69)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHHSEEECCCBT
T ss_pred CCEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEECCC
T ss_conf 951279999725578759962579999999789984920233220889999999999986928975589
No 5
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.89 E-value=3.7e-24 Score=164.85 Aligned_cols=72 Identities=50% Similarity=0.827 Sum_probs=69.0
Q ss_pred CCCCCCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECC
Q ss_conf 001160210000224440127873846799999808998389970474424789999999996301252201
Q gi|254780244|r 17 ERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLL 88 (199)
Q Consensus 17 ~~~~~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~ 88 (199)
..+.+|+|+||+|+||+|||++||++||+|+|+|||+||++|||+|||.|+++||+||..+|++||++||+.
T Consensus 3 ~~~~~l~e~vi~i~rV~k~tk~Gr~~~f~a~VvvGn~~G~vG~G~gKa~ev~~Ai~KA~~~Ak~nl~~Vplv 74 (74)
T d1pkpa2 3 PNKLELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEVPIV 74 (74)
T ss_dssp GGGSCCEEEEEEEECSSSBCSSCCSSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSCEECCCB
T ss_pred CCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHCCEEEECC
T ss_conf 654872179999950657855996268999999647999099877870177999999999998688896219
No 6
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.89 E-value=2.1e-24 Score=166.37 Aligned_cols=69 Identities=49% Similarity=0.843 Sum_probs=67.6
Q ss_pred CCEEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCC
Q ss_conf 602100002244401278738467999998089983899704744247899999999963012522016
Q gi|254780244|r 21 SIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLD 89 (199)
Q Consensus 21 ~l~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~ 89 (199)
||+|+||+|+||+|||++||++||+|||+|||++|+||||+|||.|+++||+||.++|++||++||+++
T Consensus 1 dl~e~vi~i~Rv~k~t~~Gr~~~f~alVvvGn~~G~vG~G~gKa~ev~~Ai~KA~~~Ak~nl~~V~l~n 69 (69)
T d2qale2 1 ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNN 69 (69)
T ss_dssp CCEEEEEEEECCCCCBTTBCCCCCEEEEEEECSSSBCCEEEEECSSHHHHHHHHHHHHHSSCCBCCCBT
T ss_pred CCEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEECCC
T ss_conf 940079999626789659962589999994679981947665145089999999999986928986789
No 7
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=64.51 E-value=3.9 Score=18.41 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=35.2
Q ss_pred EEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCEEC
Q ss_conf 846799999808998389970474424789999999996301252201668762001
Q gi|254780244|r 41 RFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDG 97 (199)
Q Consensus 41 ~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~~TI~h~v 97 (199)
...|.+-|.|.+ .-++|.|.|+.+ ..|-+.|.+.|...|..........+|...
T Consensus 35 ~~~F~~~v~v~g-~~~~~~g~g~sK--K~AEq~AA~~al~~L~~~~~~~~~~~P~~~ 88 (99)
T d1whqa_ 35 RQKFMCEVRVEG-FNYAGMGNSTNK--KDAQSNAARDFVNYLVRINEVKSEEVPAVG 88 (99)
T ss_dssp SEEEEEEEECTT-CSCCEEEEESSH--HHHHHHHHHHHHHHHHHHTSSCTTTSCCCC
T ss_pred CCEEEEEEEECC-CCCEECCCCCCH--HHHHHHHHHHHHHHHHHCCCCCHHHCCCCC
T ss_conf 860899998516-543100577528--899999999999999985999854488877
No 8
>d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
Probab=56.67 E-value=2.7 Score=19.38 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=12.4
Q ss_pred EEEEEEECCCCCCCCC
Q ss_conf 7999963675448503
Q gi|254780244|r 104 GKVIMRSAMAGTGVIA 119 (199)
Q Consensus 104 ~kV~l~Pap~G~Gi~a 119 (199)
+++.++|||+++||+=
T Consensus 23 ~~v~l~PA~~~~GI~F 38 (120)
T d1p42a1 23 SKLIIHPEKEGTGIRF 38 (120)
T ss_dssp EEEEEEECCTTCCEEE
T ss_pred EEEEEEECCCCCEEEE
T ss_conf 8999993799947999
No 9
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=56.60 E-value=5 Score=17.74 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=28.5
Q ss_pred CEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEE
Q ss_conf 738467999998089983899704744247899999999963012
Q gi|254780244|r 39 GRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMI 83 (199)
Q Consensus 39 Gr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli 83 (199)
.....|.+-|.++|. . +|.|.+..-..|-+.|...|..+|+
T Consensus 29 ~h~~~F~~~v~v~~~--~--~~~g~g~sKK~Aeq~AA~~aL~~L~ 69 (69)
T d1o0wa2 29 DGDRIFVVEVRVNGK--T--IATGKGRTKKEAEKEAARIAYEKLL 69 (69)
T ss_dssp TTSCEEEEEEEETTE--E--EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEEEECCE--E--EEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 888429999998999--9--9998728999999999999999869
No 10
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=50.45 E-value=5.2 Score=17.66 Aligned_cols=40 Identities=23% Similarity=0.157 Sum_probs=27.4
Q ss_pred EEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEE
Q ss_conf 467999998089983899704744247899999999963012522
Q gi|254780244|r 42 FAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVS 86 (199)
Q Consensus 42 ~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~ 86 (199)
..|.+.|.|++ ..-. |.+..-..|-+.|...|.+.|+..|
T Consensus 34 ~~F~~~v~v~~---~~~~--g~G~SKK~Aeq~AA~~aL~~l~~~p 73 (73)
T d2b7ta1 34 PLFVMSVEVNG---QVFE--GSGPTKKKAKLHAAEKALRSFVQFP 73 (73)
T ss_dssp CEEEEEEESSS---SEEE--EEESSHHHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEEEECC---EEEE--CCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 64999999999---9999--1887499999999999999985388
No 11
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.05 E-value=8.1 Score=16.47 Aligned_cols=47 Identities=23% Similarity=0.100 Sum_probs=32.5
Q ss_pred CCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEE
Q ss_conf 4401278738467999998089983899704744247899999999963012
Q gi|254780244|r 32 VSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMI 83 (199)
Q Consensus 32 V~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli 83 (199)
+.+.+.......|.+.|.+|+ ..+.|.|+ .-..|-+.|...|...|.
T Consensus 23 ~~~~~Gp~h~~~F~~~v~v~~---~~~~g~g~--sKK~Aeq~AA~~al~~L~ 69 (73)
T d2dixa1 23 CERSDVQIHVPTFTFRVTVGD---ITCTGEGT--SKKLAKHRAAEAAINILK 69 (73)
T ss_dssp EEEEECSSSSCEEEEEEEETT---EEEEECSS--CTTHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCEEEEEEEEEE---EEEEECCC--CHHHHHHHHHHHHHHHHH
T ss_conf 865358988717999999988---99886146--599999999999999987
No 12
>d2pifa1 d.382.1.1 (A:7-262) Uncharacterized protein PSTPO5379 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=45.79 E-value=6.7 Score=16.96 Aligned_cols=84 Identities=21% Similarity=0.270 Sum_probs=60.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCE---EEEECCCCCCCCEECCCCCCCEEE-EEEECCC---------------
Q ss_conf 998389970474424789999999996301---252201668762001103376799-9963675---------------
Q gi|254780244|r 53 TKSKVGFAHSTAREVPEAVRKATEAAKRNM---ISVSLLDGRTLHHDGVGRHGAGKV-IMRSAMA--------------- 113 (199)
Q Consensus 53 ~~G~vG~G~GKa~ev~~Ai~KA~~~Akknl---i~V~~~~~~TI~h~v~gk~g~~kV-~l~Pap~--------------- 113 (199)
.+-+|+|-+|.+=.+..|+.+|-.. .+|+ ..|+.|.- +|+..-.|.|.+.-| -|+|-|+
T Consensus 108 ~dD~V~F~iGCSFSFE~AL~~aGip-~rhi~~~~nVpMY~T-ni~c~paG~F~g~mVVSMRp~~~~~v~~a~~iT~~~p~ 185 (256)
T d2pifa1 108 HDDMVAFLIGCSFTFETPLQEAGIE-VRHITDGCNVPMYRT-NRACRPAGRLHGEMVVSMRPIPADRVAEASAISGRYPS 185 (256)
T ss_dssp CSSEEEEEECCSCCSHHHHHHHTCC-CHHHHTTCCCCEEEE-EEECCCBTTBCCEEEEEEEEEEGGGHHHHHHHHHC---
T ss_pred CCCEEEEEECCCCCHHHHHHHCCCC-CHHCCCCCCCCEEEC-CCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCC
T ss_conf 5877999941443467999877998-300136973050642-54345677747756899775688999999998613876
Q ss_pred --CCCCCCCHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf --448503048999999809441004546898
Q gi|254780244|r 114 --GTGVIAGGAIRAVCEVLGMHDVVAKSIGSS 143 (199)
Q Consensus 114 --G~Gi~a~~~vr~il~laGI~dv~aK~~GS~ 143 (199)
|.-|..|.. ..+||.|+..--+|..
T Consensus 186 ~HGaPiHiGdP-----~~IGI~Dl~~PD~Gd~ 212 (256)
T d2pifa1 186 VHGAPVHIGEP-----GRLGINDLSRPDFGDA 212 (256)
T ss_dssp -CCSCSEESCG-----GGGTCCCTTSCSBSCC
T ss_pred CCCCCEECCCH-----HHCCCCCCCCCCCCCC
T ss_conf 67786314897-----7818655689999997
No 13
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.66 E-value=7.1 Score=16.83 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=33.6
Q ss_pred ECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEEECCCCC
Q ss_conf 127873846799999808998389970474424789999999996301252201668
Q gi|254780244|r 35 ALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISVSLLDGR 91 (199)
Q Consensus 35 ~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V~~~~~~ 91 (199)
...-.....|.+.|.|++.. +|.|.| ..-..|-+.|...|...|..-...+.+
T Consensus 31 ~~Gp~h~~~F~~~v~v~g~~--~~~g~g--~sKK~Aeq~AA~~aL~~L~~~~~~~s~ 83 (85)
T d1x49a1 31 TSGPPHDRRFTFQVLIDEKE--FPEAKG--RSKQEARNAAAKLAVDILDNENKVDCH 83 (85)
T ss_dssp EESCSSSCEEEEEEEESSCC--CCCEEE--SSHHHHHHHHHHHHHHHHTTTCCCCSS
T ss_pred ECCCCCCCEEEEEEECCCEE--EECCCC--CCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 21898874589988418467--505566--559999999999999999871765655
No 14
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}
Probab=41.44 E-value=9.9 Score=15.94 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=28.9
Q ss_pred ECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEE
Q ss_conf 1278738467999998089983899704744247899999999963012
Q gi|254780244|r 35 ALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMI 83 (199)
Q Consensus 35 ~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli 83 (199)
.........|.+.|.++| ..+.|.| ..-..|-+.|...|..+|.
T Consensus 25 ~~G~~h~~~F~~~v~v~~---~~~~g~g--~sKK~Aeq~AA~~aL~~L~ 68 (69)
T d1di2a_ 25 ESGPPHKREFTITCRVET---FVETGSG--TSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp EESCGGGCEEEEEEEETT---EEEEEEE--SSHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCEEEEEEEEE---EEEECCC--CCHHHHHHHHHHHHHHHHC
T ss_conf 437877741689999866---7876376--7299999999999999845
No 15
>d1bf4a_ b.34.13.1 (A:) DNA-binding protein {Archaeon Sulfolobus solfataricus, Sso7d [TaxId: 2287]}
Probab=40.22 E-value=10 Score=15.88 Aligned_cols=46 Identities=15% Similarity=0.355 Sum_probs=36.7
Q ss_pred EEEEEEECCCCEECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHH
Q ss_conf 21000022444012787384679999980899838997047442478999
Q gi|254780244|r 23 VDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVR 72 (199)
Q Consensus 23 ~ekvi~v~RV~k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~ 72 (199)
+|+-++++.+-|+.+-|+..||.. -|++|.-|-|--.-+|.|--+-
T Consensus 10 eekevd~skikkvwrvgkmvsfty----d~g~gktgrgavsekdapkell 55 (63)
T d1bf4a_ 10 EEKEVDISKIKKVWRVGKMISFTY----DEGGGKTGRGAVSEKDAPKELL 55 (63)
T ss_dssp EEEEEEGGGEEEEEEETTEEEEEE----ECGGGCEEEEEEETTTCCHHHH
T ss_pred CCCCCCHHHHHHHHHHCCEEEEEE----ECCCCCCCCCCCCCCCCHHHHH
T ss_conf 300212999888970233589987----0699844655205553769999
No 16
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.91 E-value=11 Score=15.69 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=29.5
Q ss_pred CEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEE
Q ss_conf 73846799999808998389970474424789999999996301252
Q gi|254780244|r 39 GRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISV 85 (199)
Q Consensus 39 Gr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V 85 (199)
.-...|.+-|+|++.. +|-|.| ..-..|-+.|...|...|..=
T Consensus 26 ~h~~~F~~~v~v~~~~--~~~g~G--~sKK~Aeq~AA~~Al~~L~~~ 68 (76)
T d1x48a1 26 ELPQRFICKCKIGQTM--YGTGSG--VTKQEAKQLAAKEAYQKLLKS 68 (76)
T ss_dssp SSSCCEEEEEEESSCE--EEEEEE--SSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEEEECCEE--ECCCCC--CHHHHHHHHHHHHHHHHHHCC
T ss_conf 9997589999999999--578576--279999999999999999704
No 17
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=35.20 E-value=12 Score=15.33 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=28.5
Q ss_pred EECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCE
Q ss_conf 0127873846799999808998389970474424789999999996301
Q gi|254780244|r 34 TALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNM 82 (199)
Q Consensus 34 k~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknl 82 (199)
+.........|.+-|.++| ..+.|.|++ -..|-+.|...|...|
T Consensus 24 ~~~g~~h~~~F~~~v~v~~---~~~~g~g~s--KK~Aeq~AA~~aL~~L 67 (68)
T d2nuga2 24 SVEGPHHKKKFIVEAKIKE---YRTLGEGKS--KKEAEQRAAEELIKLL 67 (68)
T ss_dssp EEESCGGGCEEEEEEEETT---EEEEEEESS--HHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCEEEEEEEECC---EEEEEECCC--HHHHHHHHHHHHHHHH
T ss_conf 8418887847999999887---799995099--9999999999999973
No 18
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.10 E-value=13 Score=15.13 Aligned_cols=42 Identities=26% Similarity=0.209 Sum_probs=28.0
Q ss_pred CCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEE
Q ss_conf 78738467999998089983899704744247899999999963012
Q gi|254780244|r 37 PGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMI 83 (199)
Q Consensus 37 kgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli 83 (199)
.......|.+.|.|+| ....|.|+ .-..|-+.|...|...|-
T Consensus 33 g~~h~~~F~~~v~v~~---~~~~g~g~--SKK~Ae~~AA~~aL~~l~ 74 (89)
T d1uhza_ 33 GMPRRREFVMQVKVGN---EVATGTGP--NKKIAKKNAAEAMLLQLG 74 (89)
T ss_dssp SCSTTCEEEEEEEETT---EEEEEEES--SHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEEEEEE---EECCCCCH--HHHHHHHHHHHHHHHHHC
T ss_conf 5677506999999965---64023203--789999999999999967
No 19
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.94 E-value=14 Score=15.11 Aligned_cols=46 Identities=13% Similarity=0.048 Sum_probs=30.3
Q ss_pred ECCCCEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEE
Q ss_conf 12787384679999980899838997047442478999999999630125
Q gi|254780244|r 35 ALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMIS 84 (199)
Q Consensus 35 ~tkgGr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~ 84 (199)
.+.-.....|.+.|.|++. .++.|.|+ .-..|-+.|...|...|..
T Consensus 37 ~~Gp~h~~~F~v~v~v~~~--~~~~g~G~--sKK~Aeq~AA~~aL~~L~~ 82 (90)
T d1qu6a1 37 NSGPPHDRRFTFQVIIDGR--EFPEGEGR--SKKEAKNAAAKLAVEILNK 82 (90)
T ss_dssp SCBTTTBCCEEEEEESSSS--CCCEEECC--SSHHHHHHHHHHHHHHHHS
T ss_pred EECCCCCCEEEEEEEECCE--EEECCCCC--CHHHHHHHHHHHHHHHHHH
T ss_conf 1079887447999997756--64056787--6999999999999999983
No 20
>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}
Probab=32.20 E-value=9.2 Score=16.14 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=15.8
Q ss_pred CCCCEEEEECCCCC-HHHHHHHHHH
Q ss_conf 99838997047442-4789999999
Q gi|254780244|r 53 TKSKVGFAHSTARE-VPEAVRKATE 76 (199)
Q Consensus 53 ~~G~vG~G~GKa~e-v~~Ai~KA~~ 76 (199)
|..++|+|.+.+.+ +..|+++|+.
T Consensus 19 G~A~iG~G~a~G~~ra~~Av~~Al~ 43 (121)
T d1w5fa2 19 GAAILGIGVGKGEHRAREAAKKAME 43 (121)
T ss_dssp EEEEEEEEEEESTTHHHHHHHHHHT
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 9389999986798318899999974
No 21
>d2vapa2 d.79.2.1 (A:232-354) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=27.78 E-value=14 Score=15.06 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=16.2
Q ss_pred CCCCEEEEECCCCC-HHHHHHHHHH
Q ss_conf 99838997047442-4789999999
Q gi|254780244|r 53 TKSKVGFAHSTARE-VPEAVRKATE 76 (199)
Q Consensus 53 ~~G~vG~G~GKa~e-v~~Ai~KA~~ 76 (199)
|..++|+|.+.+.+ +..|+++|+.
T Consensus 16 G~a~~giG~a~g~~ra~~Av~~Al~ 40 (123)
T d2vapa2 16 GLAMIGIGESDSEKRAKEAVSMALN 40 (123)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8189986124887407999999984
No 22
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.30 E-value=17 Score=14.52 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=28.4
Q ss_pred CEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEE
Q ss_conf 738467999998089983899704744247899999999963012
Q gi|254780244|r 39 GRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMI 83 (199)
Q Consensus 39 Gr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli 83 (199)
|-...|.+.|.+++. .+|.|.|+ .-..|-+.|...|.+.|+
T Consensus 36 g~~~~F~~~v~i~g~--~~~~g~G~--sKK~Aeq~AA~~AL~~L~ 76 (85)
T d1x47a1 36 NPSEPFGASVTIDGV--TYGSGTAS--SKKLAKNKAARATLEILI 76 (85)
T ss_dssp SSSCCEEEEEEETTE--EEEEEEES--SHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEEEECCE--EEECCCCC--HHHHHHHHHHHHHHHHHH
T ss_conf 898888999999999--97447841--299999999999999998
No 23
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.04 E-value=20 Score=14.03 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=28.5
Q ss_pred CEEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHCEEEE
Q ss_conf 73846799999808998389970474424789999999996301252
Q gi|254780244|r 39 GRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMISV 85 (199)
Q Consensus 39 Gr~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknli~V 85 (199)
.....|.+-|.|++. .-.|.| ..-..|-+.|...|...|+.+
T Consensus 28 ~h~~~F~~~v~v~~~---~~~g~G--~SKK~Ak~~AA~~aL~~L~~~ 69 (71)
T d2b7va1 28 SHAKSFVMSVVVDGQ---FFEGSG--RNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp TTTCCEEEEEECSSC---EEEEEE--SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEECCE---EEEECC--CCHHHHHHHHHHHHHHHHHCC
T ss_conf 989739999999999---998168--988999999999999998746
No 24
>d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein PlsX {Enterococcus faecalis [TaxId: 1351]}
Probab=22.68 E-value=21 Score=13.99 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.4
Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 80944100454689888899999999995069
Q gi|254780244|r 129 VLGMHDVVAKSIGSSNPHNVIRATFEVLRSQS 160 (199)
Q Consensus 129 laGI~dv~aK~~GS~N~~NvvkAt~~AL~~~~ 160 (199)
+.|+.-+.-|.+||+++..+..|...|....+
T Consensus 286 lLGl~g~vik~HG~S~~~a~~nAI~~a~~~~~ 317 (329)
T d1u7na_ 286 LFGLKAPVIKTHGATGPDAVRYTIRQIHTMLE 317 (329)
T ss_dssp EETBSSCEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCCEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 97488318983789998999999999999998
Done!