RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780244|ref|YP_003064657.1| 30S ribosomal protein S5 [Candidatus Liberibacter asiaticus str. psy62] (199 letters) >gnl|CDD|30447 COG0098, RpsE, Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]. Length = 181 Score = 191 bits (487), Expect = 1e-49 Identities = 84/177 (47%), Positives = 117/177 (66%) Query: 3 QKERSQRDNWQNREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHS 62 + +E + +++++V INRVS + GGRRF FS LVVVGD +VGF Sbjct: 5 IATIEFKSGLPIKEPEVDELLEKVVDINRVSKVVKGGRRFRFSALVVVGDRNGRVGFGIG 64 Query: 63 TAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGA 122 A+EVPEA+RKA E AK+N+I V +G T+ H+ +G+HGA KV+++ A GTG+IAGGA Sbjct: 65 KAKEVPEAIRKAIEDAKKNIIEVPRGNGHTIPHEVIGKHGAVKVLLKPAPEGTGIIAGGA 124 Query: 123 IRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKHSLLQAR 179 +RAV E+ G+ DV+AKS+GS NP NV+RATF+ L+ P DVA +RG K + Sbjct: 125 VRAVLELAGIKDVLAKSLGSRNPINVVRATFDALKKLRTPEDVAAKRGKKVEDILGA 181 >gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated. Length = 143 Score = 110 bits (277), Expect = 2e-25 Identities = 50/141 (35%), Positives = 86/141 (60%), Gaps = 5/141 (3%) Query: 1 MAQKERSQRDNWQNREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFA 60 M K+++++ N + N +R++ I RVS + GG++ +F +VV+G+ VG Sbjct: 8 MYNKKKNRKSNIKE-----NKWEERVIQIKRVSKVVKGGKKLSFRAIVVIGNENGWVGVG 62 Query: 61 HSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAG 120 A +V AV+KA AK+N+I++ L ++ H+ G GA KVI+R + G+GVIAG Sbjct: 63 VGKADDVQNAVKKAVTDAKKNLITIPLTKSNSIPHNITGIFGAAKVILRPSAPGSGVIAG 122 Query: 121 GAIRAVCEVLGMHDVVAKSIG 141 G++R V E+ G+ +++AK +G Sbjct: 123 GSVRIVLELAGIKNILAKQLG 143 >gnl|CDD|146383 pfam03719, Ribosomal_S5_C, Ribosomal protein S5, C-terminal domain. Length = 74 Score = 110 bits (277), Expect = 4e-25 Identities = 39/73 (53%), Positives = 54/73 (73%) Query: 98 VGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLR 157 G+ GA KV+++ A GTG+IAGGA+RAV E+ G+ DV+AKS+GS NP NV++ATF+ L+ Sbjct: 2 TGKFGAVKVLLKPAPPGTGIIAGGAVRAVLELAGIKDVLAKSLGSRNPINVVKATFDALK 61 Query: 158 SQSHPRDVANRRG 170 P +VA RG Sbjct: 62 KLRTPEEVAALRG 74 >gnl|CDD|37857 KOG2646, KOG2646, KOG2646, Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]. Length = 396 Score = 74.7 bits (183), Expect = 1e-14 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 3/162 (1%) Query: 12 WQNREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTARE-VPEA 70 N + + ++ + RV G+ + LVVVG+ G A + A Sbjct: 176 GMNYLDFELRHLE--LVRRRVENQNRKGKIASMYALVVVGNGNGAAGLGEGKAADPNSPA 233 Query: 71 VRKATEAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVL 130 + KA A RN+ + + RT++ D R ++ M+S G G+ + +CE Sbjct: 234 IYKAIGRAVRNLGYIERYERRTIYGDIDDRFHEVRLDMKSRPDGFGLRCNPILIKICECA 293 Query: 131 GMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIK 172 G+ D+ K GS N N+ +A FE L Q + +A R+G+ Sbjct: 294 GIKDISGKVKGSRNEMNITKAAFEALALQETHQQLAYRKGLH 335 >gnl|CDD|144065 pfam00333, Ribosomal_S5, Ribosomal protein S5, N-terminal domain. Length = 67 Score = 71.5 bits (176), Expect = 1e-13 Identities = 32/64 (50%), Positives = 40/64 (62%) Query: 24 DRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAKRNMI 83 ++++ INRV GGRRF+F LVVVGD VG A+EVP A+RKA E AK N+I Sbjct: 4 EKVLVINRVQKVTKGGRRFSFRALVVVGDKNGHVGLGEGKAKEVPGAIRKAIEDAKLNLI 63 Query: 84 SVSL 87 V Sbjct: 64 EVPR 67 >gnl|CDD|36095 KOG0877, KOG0877, KOG0877, 40S ribosomal protein S2/30S ribosomal protein S5 [Translation, ribosomal structure and biogenesis]. Length = 213 Score = 63.1 bits (153), Expect = 4e-11 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 8/142 (5%) Query: 20 NSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFAHSTAREVPEAVRKATEAAK 79 S+ D ++ I V G+R F V +GD VG ++EV A+R A AK Sbjct: 49 ASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAK 108 Query: 80 RNMISVSLLDGR-------TLHHDGVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGM 132 +++ V T+ G G+ V + A GTG+++ + + + G+ Sbjct: 109 LSIVPVRRGYWGNKIGKPHTVPCKVTGDCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGI 168 Query: 133 HDVVAKSIGSSNPH-NVIRATF 153 D + G + N +ATF Sbjct: 169 DDCYTSARGCTATLGNFAKATF 190 >gnl|CDD|37668 KOG2457, KOG2457, KOG2457, A/G-specific adenine DNA glycosylase [Replication, recombination and repair]. Length = 555 Score = 27.4 bits (60), Expect = 2.9 Identities = 12/37 (32%), Positives = 20/37 (54%) Query: 97 GVGRHGAGKVIMRSAMAGTGVIAGGAIRAVCEVLGMH 133 GVG++ AG + + TG++ G IR + L +H Sbjct: 213 GVGQYTAGAIASIAFNQVTGIVDGNVIRVLSRALAIH 249 >gnl|CDD|145697 pfam02678, Pirin, Pirin. This family consists of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localized within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures. A tomato homologue of human Pirin has been found to be induced during programmed cell death. Human Pirin interacts with Bcl-3 and NFI and hence is probably involved in the regulation of DNA transcription and replication. It appears to be an Fe(II)-containing member of the Cupin superfamily. Length = 107 Score = 26.5 bits (59), Expect = 5.0 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%) Query: 80 RNMISVS-LLDGRTLHHDGVGRHG---AGKV-IMRSAMAGTGVI 118 R +V+ LL+G H D +G HG G V M AG G++ Sbjct: 48 RGFETVTYLLEGEIEHRDSLGNHGVIRPGDVQWMT---AGRGIV 88 >gnl|CDD|113202 pfam04421, Mss4, Mss4 protein. Length = 92 Score = 26.3 bits (58), Expect = 5.4 Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%) Query: 1 MAQKERSQRDNWQNREERDNSIVDRIVAINRVSTALP-GGRRF 42 M QK + DN D +V + A V + ++ Sbjct: 19 MEQKTMRESDNVGVEPLIDFFLVKDMFAFENVGFSKKVKNLKY 61 >gnl|CDD|32700 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]. Length = 426 Score = 26.0 bits (57), Expect = 6.9 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 44 FSVLVVVGDTKSKVGF-AHSTAREVPEAVRKATEAAKRNMISVSL 87 FS L +GD +S V A +T R++ E + A +I +S+ Sbjct: 364 FSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPD-LIRLSV 407 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.316 0.129 0.359 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,173,701 Number of extensions: 107492 Number of successful extensions: 363 Number of sequences better than 10.0: 1 Number of HSP's gapped: 362 Number of HSP's successfully gapped: 20 Length of query: 199 Length of database: 6,263,737 Length adjustment: 89 Effective length of query: 110 Effective length of database: 4,340,536 Effective search space: 477458960 Effective search space used: 477458960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.2 bits)