BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780244|ref|YP_003064657.1| 30S ribosomal protein S5 [Candidatus Liberibacter asiaticus str. psy62] (199 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780244|ref|YP_003064657.1| 30S ribosomal protein S5 [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 399 bits (1025), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/199 (100%), Positives = 199/199 (100%) Query: 1 MAQKERSQRDNWQNREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFA 60 MAQKERSQRDNWQNREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFA Sbjct: 1 MAQKERSQRDNWQNREERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGFA 60 Query: 61 HSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAG 120 HSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAG Sbjct: 61 HSTAREVPEAVRKATEAAKRNMISVSLLDGRTLHHDGVGRHGAGKVIMRSAMAGTGVIAG 120 Query: 121 GAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKHSLLQARR 180 GAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKHSLLQARR Sbjct: 121 GAIRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEVLRSQSHPRDVANRRGIKHSLLQARR 180 Query: 181 VVSSKSSSYSRDSKNKGGN 199 VVSSKSSSYSRDSKNKGGN Sbjct: 181 VVSSKSSSYSRDSKNKGGN 199 >gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter asiaticus str. psy62] Length = 382 Score = 23.5 bits (49), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 123 IRAVCEVLGMHDVVAKSIGSSNPHNVIRATFEV--LRSQSHPRDVANRRGI 171 +++VC VL +V KSI + + V L SH RDV R + Sbjct: 188 MKSVCNVLSQSKIVQKSITFRRTQILFEESMRVGILEMISHVRDVQALREL 238 >gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 22.3 bits (46), Expect = 6.5, Method: Compositional matrix adjust. Identities = 10/43 (23%), Positives = 23/43 (53%) Query: 17 ERDNSIVDRIVAINRVSTALPGGRRFAFSVLVVVGDTKSKVGF 59 ++ +I+ +I I+ + ++ F FS + +GD + VG+ Sbjct: 64 KKSKAIITKISVIHHIDGSIIDPYVFMFSCITSLGDKYNFVGY 106 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.129 0.359 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 116,008 Number of Sequences: 1233 Number of extensions: 4196 Number of successful extensions: 10 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 4 length of query: 199 length of database: 328,796 effective HSP length: 70 effective length of query: 129 effective length of database: 242,486 effective search space: 31280694 effective search space used: 31280694 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 36 (18.5 bits)