HHsearch alignment for GI: 254780245 and conserved domain: CHL00139

Probab=100.00  E-value=1.4e-45  Score=291.85  Aligned_cols=109  Identities=47%  Similarity=0.759  Sum_probs=105.7

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99877687505787882499996387099999962797599998502100000134686678999999999999997799
Q gi|254780245|r   11 RISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGV   90 (120)
Q Consensus        11 R~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI   90 (120)
T Consensus         1 R~~RiR~ki~gt~-~rpRL~V~rSnkhiyaQiIDD~~g~tl~saST~~k~~~~~~~~~~n~e~A~~vG~~ia~~a~~~gI   79 (109)
T CHL00139          1 KHRRLRKKIQGTA-ERPRLSVFRSNKHIYAQIIDDTNGKTLVSCSTLDPDVKSNLSIGSTCDASKLVGQKLAKKSLKKGI   79 (109)
T ss_pred             CCHHHHHHCCCCC-CCCEEEEEECCCEEEEEEEECCCCCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9466662604899-988899997088189999987999899996233677765514786699999999999999998799


Q ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             799983898631225999999999658789
Q gi|254780245|r   91 KSVYFDRGKHLYCGRIAALADAVRKGGVSF  120 (120)
Q Consensus        91 ~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F  120 (120)
T Consensus        80 ~~VvFDRggy~YHGrVkalAd~aRe~GLkF  109 (109)
T CHL00139         80 TKVVFDRGGKLYHGRIKALAEAAREAGLQF  109 (109)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             999985899842219999999999848989