HHsearch alignment for GI: 254780245 and conserved domain: TIGR03632
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=96.23 E-value=0.1 Score=31.09 Aligned_cols=84 Identities=23% Similarity=0.265 Sum_probs=63.0
Q ss_pred EEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC-CCCCHHHH
Q ss_conf 99996387099999962797599998502100000134686678999999999999997799799-98389-86312259
Q gi|254780245|r 29 LSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG-KHLYCGRI 106 (120)
Q Consensus 29 L~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~-g~~yHGrv 106 (120)
T Consensus 3 ~hI~~s~NNTiit~T-d~~Gn~~~~~S~G~~gfKg~rK--~T~~Aa~~aa~~~~~~~~~~gi~~v~V~ikG~G~---Gr~ 76 (108)
T TIGR03632 3 AHIHATFNNTIVTIT-DPQGNVLSWASAGAVGFKGSKK--STPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGA---GRE 76 (108)
T ss_pred EEEEECCCCEEEEEE-CCCCCEEEEEECCCEECCCCCC--CCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC---CHH
T ss_conf 999935787899998-7999999999477333277655--8889999999999999997096199999968997---479
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999965878
Q gi|254780245|r 107 AALADAVRKGGVS 119 (120)
Q Consensus 107 ka~ad~~R~~Gl~ 119 (120)
T Consensus 77 ~-air~l~~~glk 88 (108)
T TIGR03632 77 S-AIRALQAAGLE 88 (108)
T ss_pred H-HHHHHHHCCCE
T ss_conf 9-99999988988