HHsearch alignment for GI: 254780245 and conserved domain: cd00432
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=100.00 E-value=1.9e-34 Score=225.05 Aligned_cols=96 Identities=51% Similarity=0.744 Sum_probs=93.1
Q ss_pred CCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 87882499996387099999962797599998502100000134686678999999999999997799799983898631
Q gi|254780245|r 23 SRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLY 102 (120)
Q Consensus 23 ~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~y 102 (120)
T Consensus 8 ~~~~pRl~V~~Snk~i~aqiid~~~~~tl~sasT~~~~~~~~~~~~~n~~aA~~vG~~la~r~~~~gi~~vvfDrg~~~y 87 (103)
T cd00432 8 TQERPRLVVRKSNKHIYAQIIDDSGDKTLVSASTLELAIKGVLGSGNNVEAAYLVGRLLAKRALEKGIKKVVFDRGGYRY 87 (103)
T ss_pred CCCCCEEEEEEECCEEEEEEEECCCCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 89998899998189389999985999599999714065531236886299999999999999998799889986799976
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 2259999999996587
Q gi|254780245|r 103 CGRIAALADAVRKGGV 118 (120)
Q Consensus 103 HGrvka~ad~~R~~Gl 118 (120)
T Consensus 88 hgrv~a~a~~~re~Gl 103 (103)
T cd00432 88 HGRVKALAKGAREGGL 103 (103)
T ss_pred CHHHHHHHHHHHHCCC
T ss_conf 3799999999998589