HHsearch alignment for GI: 254780245 and conserved domain: pfam00411
>pfam00411 Ribosomal_S11 Ribosomal protein S11.
Probab=96.39 E-value=0.06 Score=32.43 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=61.9
Q ss_pred EEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC-CCCCHHHH
Q ss_conf 99996387099999962797599998502100000134686678999999999999997799799-98389-86312259
Q gi|254780245|r 29 LSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG-KHLYCGRI 106 (120)
Q Consensus 29 L~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~-g~~yHGrv 106 (120)
T Consensus 3 vhi~~t~NNTiitlT-D~~G~~l~~~S~G~~gfKg~rK--~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~---Gr~ 76 (109)
T pfam00411 3 AHIQASFNNTIVTVT-DVIGRVVSWSSAGGCGFKGSRK--STPYAAQTAAENAAKIAKEQGIKALEVKIKGPGP---GRE 76 (109)
T ss_pred EEEEECCCCEEEEEE-CCCCCEEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC---CHH
T ss_conf 999925788899998-5998999999578765588876--8989999999999999998198599999988998---789
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999965878
Q gi|254780245|r 107 AALADAVRKGGVS 119 (120)
Q Consensus 107 ka~ad~~R~~Gl~ 119 (120)
T Consensus 77 ~a-ir~l~~~gl~ 88 (109)
T pfam00411 77 SA-LRALARSGLR 88 (109)
T ss_pred HH-HHHHHHCCCE
T ss_conf 99-9999877998