HHsearch alignment for GI: 254780245 and conserved domain: pfam00411

>pfam00411 Ribosomal_S11 Ribosomal protein S11.
Probab=96.39  E-value=0.06  Score=32.43  Aligned_cols=84  Identities=21%  Similarity=0.218  Sum_probs=61.9

Q ss_pred             EEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC-CCCCHHHH
Q ss_conf             99996387099999962797599998502100000134686678999999999999997799799-98389-86312259
Q gi|254780245|r   29 LSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG-KHLYCGRI  106 (120)
Q Consensus        29 L~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~-g~~yHGrv  106 (120)
T Consensus         3 vhi~~t~NNTiitlT-D~~G~~l~~~S~G~~gfKg~rK--~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~---Gr~   76 (109)
T pfam00411         3 AHIQASFNNTIVTVT-DVIGRVVSWSSAGGCGFKGSRK--STPYAAQTAAENAAKIAKEQGIKALEVKIKGPGP---GRE   76 (109)
T ss_pred             EEEEECCCCEEEEEE-CCCCCEEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC---CHH
T ss_conf             999925788899998-5998999999578765588876--8989999999999999998198599999988998---789


Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             9999999965878
Q gi|254780245|r  107 AALADAVRKGGVS  119 (120)
Q Consensus       107 ka~ad~~R~~Gl~  119 (120)
T Consensus        77 ~a-ir~l~~~gl~   88 (109)
T pfam00411        77 SA-LRALARSGLR   88 (109)
T ss_pred             HH-HHHHHHCCCE
T ss_conf             99-9999877998