HHsearch alignment of GI: 254780245 and MMDB domain: 3i1n_O_

>3i1n_O (O:) 50S ribosomal protein L18; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_M 1p86_M 1vs8_O 2aw4_O 2awb_O 1vs6_O 2i2v_O 2j28_O 2i2t_O* 2qao_O* 2qba_O* 2qbc_O* 2qbe_O 2qbg_O 2qbi_O* 2qbk_O* 2qov_O 2qox_O 2qoz_O* 2qp1_O* ...
Probab=100.00  E-value=3.2e-38  Score=247.05  Aligned_cols=117  Identities=43%  Similarity=0.645  Sum_probs=113.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88799999899877687505787882499996387099999962797599998502100000134686678999999999
Q gi|254780245|r    2 ATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLL   81 (120)
Q Consensus         2 ~~k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~i   81 (120)
                      |+++..+.+|+.|+++++.+.  .+|||+||+||+|||||||||.+++||||+||.|++++..+.+++|++||+.+|++|
T Consensus         1 ~~r~~~r~~R~~r~~~k~~~~--~~pRl~V~~Snk~i~aqiid~~~~~~l~sast~e~~~~~~~~~~~n~~Aa~~vG~~l   78 (117)
T 3i1n_O            1 MDKKSARIRRATRARRKLQEL--GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAV   78 (117)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHT--CCCEEEEEECSSCEEEEEECTTSSCEEEEEESSSSHHHHTCSSSSSTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCC--CCCEEEEEECCCCEEEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             982689999999999987268--997599997188279999977988336642014676664327787768999999999


Q ss_pred             HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             999997799799983898631225999999999658789
Q gi|254780245|r   82 VERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF  120 (120)
Q Consensus        82 a~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F  120 (120)
                      |++++++||++|+||||||+|||||+||+|++||+||+|
T Consensus        79 a~r~~~~gi~~v~~Drg~~~y~grv~a~~~~~r~~Gl~f  117 (117)
T 3i1n_O           79 AERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF  117 (117)
T ss_dssp             HHHHHHTTCCCCEEECTTSCTTSTTHHHHHHHHTTTCCC
T ss_pred             HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             999998799989976999753579999999999828889