HHsearch results for GI: 254780245 and protein with PDBid: 2j01_S
>2j01_S 50S ribosomal protein L18; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=100.00 E-value=1.8e-43 Score=277.31 Aligned_cols=112 Identities=51% Similarity=0.753 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88799999899877687505787882499996387099999962797599998502100000134686678999999999
Q gi|254780245|r 2 ATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLL 81 (120)
Q Consensus 2 ~~k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~i 81 (120)
|+|.+.+.||+.|+|+++++. .+|||+|||||+|||||||||.+++||+++||++++++ .+|+++|+.||++|
T Consensus 1 m~k~~~~~rR~~R~R~ki~~~--~~pRL~V~rSnkhiyaQiIdd~~~~tl~s~St~~k~~k-----~~n~~aA~~vG~~i 73 (112)
T 2j01_S 1 MARLTAYERRKFRVRNRIKRT--GRLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRAL 73 (112)
T ss_dssp ----------CCCCCSCSCCC--SSCEEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCC-----SCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCC--CCCEEEEEECCCEEEEEEEECCCCCEEEEEECCCCCCC-----CCHHHHHHHHHHHH
T ss_conf 985248999999999997279--98759999708836999997799868521104100135-----88599999999999
Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999997799799983898631225999999999658789
Q gi|254780245|r 82 VERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120)
Q Consensus 82 a~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120)
|++++++||++|+||||||+|||||+||||++||+||+|
T Consensus 74 a~ka~~~gI~~vvFDR~g~~yhGrvka~ad~~R~~Gl~F 112 (112)
T 2j01_S 74 AEKALALGIKQVAFDRGPYKYHGRVKALAEGAREGGLEF 112 (112)
T ss_dssp HHHHHHTSCCCCBCCCSTTCSSSSCCCCSSCTTCC----
T ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999998699889974799720249999999999838999