Query gi|254780245|ref|YP_003064658.1| 50S ribosomal protein L18 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 120 No_of_seqs 103 out of 1938 Neff 5.6 Searched_HMMs 23785 Date Tue May 24 08:24:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780245.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3bbo_Q Ribosomal protein L18; 100.0 0 0 295.9 2.0 118 2-120 42-161 (161) 2 1ovy_A 50S ribosomal protein L 100.0 2.2E-43 0 276.8 7.9 116 2-120 5-120 (120) 3 3ofq_O 50S ribosomal protein L 100.0 1.7E-44 0 283.3 -0.4 116 3-120 1-116 (116) 4 2j01_S 50S ribosomal protein L 100.0 1.8E-43 0 277.3 -1.5 112 2-120 1-112 (112) 5 2zjr_L 50S ribosomal protein L 100.0 4.8E-42 0 268.8 3.7 112 1-120 1-114 (114) 6 1vq8_N 50S ribosomal protein L 100.0 1.1E-32 4.8E-37 213.2 12.2 103 15-119 23-129 (187) 7 2zkr_n 60S ribosomal protein L 99.5 1.5E-12 6.3E-17 94.0 13.0 95 25-119 47-172 (297) 8 3jyw_E 60S ribosomal protein L 99.2 2.9E-12 1.2E-16 92.3 1.8 94 26-119 38-162 (237) 9 2vqe_K 30S ribosomal protein S 97.2 0.0056 2.4E-07 37.2 10.7 87 27-119 17-104 (129) 10 3ofo_K 30S ribosomal protein S 96.2 0.016 6.6E-07 34.6 7.1 85 28-119 8-94 (117) 11 2zkq_k 40S ribosomal protein S 95.8 0.065 2.7E-06 30.9 8.8 89 28-119 30-125 (151) 12 3bbn_K Ribosomal protein S11; 95.7 0.031 1.3E-06 32.9 6.7 85 28-119 31-117 (140) 13 1s1h_K RP59A, 40S ribosomal pr 94.9 0.17 7E-06 28.5 8.5 69 28-98 15-84 (136) 14 3mi6_A Alpha-galactosidase; NE 78.4 2.8 0.00012 21.2 4.7 42 79-120 350-409 (745) 15 1wek_A Hypothetical protein TT 73.6 5 0.00021 19.8 5.5 39 71-118 55-93 (217) 16 2zxd_A Alpha-L-fucosidase, put 71.1 5.7 0.00024 19.4 5.0 42 79-120 108-168 (455) 17 3gza_A Putative alpha-L-fucosi 70.3 5.1 0.00021 19.7 4.3 42 79-120 62-125 (443) 18 3eyp_A Putative alpha-L-fucosi 65.4 7.5 0.00031 18.7 4.6 42 79-120 57-120 (469) 19 2w4l_A DCMP deaminse, deoxycyt 61.3 7.6 0.00032 18.7 3.8 40 81-120 110-149 (178) 20 1rcu_A Conserved hypothetical 54.5 12 0.00049 17.6 7.4 39 71-118 44-82 (195) 21 3g85_A Transcriptional regulat 51.3 13 0.00055 17.3 5.2 45 76-120 113-160 (289) 22 3mo4_A Alpha-1,3/4-fucosidase; 49.1 5.4 0.00023 19.6 1.4 41 80-120 68-130 (480) 23 3miz_A Putative transcriptiona 48.4 15 0.00061 17.0 4.3 45 76-120 117-164 (301) 24 2wvv_A Alpha-L-fucosidase; alp 44.7 6.9 0.00029 18.9 1.4 41 80-120 82-141 (450) 25 3h7a_A Short chain dehydrogena 44.4 17 0.00071 16.6 4.8 41 75-119 17-57 (252) 26 3ff4_A Uncharacterized protein 37.7 22 0.00091 16.0 3.6 38 77-119 70-107 (122) 27 3a5v_A Alpha-galactosidase; be 37.6 22 0.00091 16.0 5.3 50 71-120 25-90 (397) 28 2c07_A 3-oxoacyl-(acyl-carrier 36.0 21 0.00087 16.1 2.7 43 73-119 52-94 (285) 29 1weh_A Conserved hypothetical 35.3 24 0.00099 15.8 5.5 39 71-118 19-57 (171) 30 1uas_A Alpha-galactosidase; TI 34.3 25 0.001 15.7 4.9 50 71-120 25-90 (362) 31 2hvw_A Deoxycytidylate deamina 34.1 14 0.00058 17.2 1.5 36 81-120 136-171 (184) 32 2jui_A PLNE; ampiphilic alpha 34.1 17 0.00072 16.6 2.0 21 95-115 1-21 (33) 33 1yb1_A 17-beta-hydroxysteroid 31.4 27 0.0011 15.4 4.7 43 73-119 39-81 (272) 34 1gtk_A Porphobilinogen deamina 26.7 33 0.0014 14.9 4.5 23 69-91 278-300 (313) 35 2jah_A Clavulanic acid dehydro 26.2 34 0.0014 14.8 4.5 41 74-118 16-56 (247) 36 3ftp_A 3-oxoacyl-[acyl-carrier 25.4 35 0.0015 14.7 4.5 44 72-119 35-78 (270) 37 3gv0_A Transcriptional regulat 24.8 36 0.0015 14.7 5.8 44 76-119 113-159 (288) 38 2o20_A Catabolite control prot 24.5 36 0.0015 14.6 5.2 46 75-120 165-213 (332) 39 2wq7_A RE11660P; lyase-DNA com 23.9 37 0.0016 14.6 3.6 42 79-120 114-156 (543) 40 1geg_A Acetoin reductase; SDR 23.8 38 0.0016 14.6 4.4 42 74-119 11-52 (256) 41 1szn_A Alpha-galactosidase; (b 23.7 38 0.0016 14.5 4.8 47 74-120 31-93 (417) 42 3kke_A LACI family transcripti 23.6 38 0.0016 14.5 5.2 45 76-120 117-164 (303) 43 1xg5_A ARPG836; short chain de 23.3 39 0.0016 14.5 4.5 42 73-118 40-81 (279) 44 1vq2_A DCMP deaminase, deoxycy 22.9 18 0.00077 16.4 0.5 35 82-119 136-170 (193) 45 3kjx_A Transcriptional regulat 22.8 39 0.0017 14.4 4.2 45 76-120 171-219 (344) 46 2iz1_A 6-phosphogluconate dehy 22.3 40 0.0017 14.4 3.7 22 77-98 16-37 (474) 47 2zko_A NS1, NS1A, non-structur 22.1 41 0.0017 14.4 2.8 20 68-87 54-73 (73) 48 3gyb_A Transcriptional regulat 22.0 41 0.0017 14.3 5.5 46 75-120 103-149 (280) 49 1qyd_A Pinoresinol-lariciresin 21.5 42 0.0018 14.3 4.7 24 77-100 16-39 (313) 50 3nyw_A Putative oxidoreductase 21.4 42 0.0018 14.3 3.7 40 73-116 15-54 (250) 51 3al0_B Aspartyl/glutamyl-tRNA( 21.0 16 0.00066 16.8 -0.1 63 37-103 10-85 (482) 52 3gaf_A 7-alpha-hydroxysteroid 20.7 44 0.0018 14.2 3.9 43 73-119 20-62 (256) 53 1iuk_A Hypothetical protein TT 20.2 45 0.0019 14.1 3.3 35 81-120 86-120 (140) No 1 >3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Vitis vinifera} Probab=100.00 E-value=0 Score=295.91 Aligned_cols=118 Identities=39% Similarity=0.614 Sum_probs=110.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCC--CCCCCCHHHHHHHHH Q ss_conf 887999998998776875057878824999963870999999627975999985021000001--346866789999999 Q gi|254780245|r 2 ATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSS--LKTGANIVAATAVGN 79 (120) Q Consensus 2 ~~k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~--~~~~~ni~aA~~vG~ 79 (120) -++++.+.+|++|+|+++++++ ++|||+|||||+|||||||||.+++||+++||++++++.. ....+|+++|+.||+ T Consensus 42 k~r~~~R~rR~~RiRkKi~gta-~rPRL~VfrSnkhIYAQiIDD~~~~tL~saSTl~K~lk~~~~~~~~~nieaA~~vG~ 120 (161) T 3bbo_Q 42 KTRREDRTARHVRIRKKVEGTP-ERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGE 120 (161) T ss_dssp CCCCCCGGGTSCCSCSGGGGSS-SCCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEECCCEEEEEEEECCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 7799999999999999860789-997799997089689999974799289998543113555403476138999999999 Q ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 99999997799799983898631225999999999658789 Q gi|254780245|r 80 LLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 80 ~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120) +||++++++||++|+||||||+|||||+||||++||+||+| T Consensus 121 ~iA~kak~kgI~~VvFDRgg~~YHGRVkAlAd~aRe~GL~F 161 (161) T 3bbo_Q 121 VIASACLEKGITKVAFDRGGYPYHGRVKALADAAREKGLQF 161 (161) T ss_dssp HSSSHHHHTSSCCCCCCCSSSCSSSTTHHHHHHHTTTTCCC T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCC T ss_conf 99999998799889981799710059999999999848889 No 2 >1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Probab=100.00 E-value=2.2e-43 Score=276.78 Aligned_cols=116 Identities=47% Similarity=0.718 Sum_probs=107.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 88799999899877687505787882499996387099999962797599998502100000134686678999999999 Q gi|254780245|r 2 ATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLL 81 (120) Q Consensus 2 ~~k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~i 81 (120) ++|++.+.+|+.|+|.++.+++ .+|||+||+||+|||||||||.+++|||++||++++++.. ..+|+++|++||++| T Consensus 5 ~~k~~~R~rR~~RiR~kl~~t~-~rpRL~V~rSnkhiyaQlIdd~~~~tl~saSt~~k~~k~~--~~~n~~aA~~vG~~i 81 (120) T 1ovy_A 5 VDRNAVRKKRHARIRKKIFGTT-ERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLD--STNNIEAAKKVGELV 81 (120) T ss_dssp -------------------CCS-SCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCSS--CTTSHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEECCEEEEEEEECCCCCEEEEEECCCHHHCCC--CCCCHHHHHHHHHHH T ss_conf 7689999999999898850788-8866999981782799999578897899963653443446--799599999999999 Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 999997799799983898631225999999999658789 Q gi|254780245|r 82 VERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 82 a~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120) |++++++||++|+||||||+|||||+||||++||+||+| T Consensus 82 a~~a~~~gi~~v~fDR~g~~yhGrVka~ad~aRe~Gl~F 120 (120) T 1ovy_A 82 AKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120 (120) T ss_dssp HHHHHHHSSSCCCCCSTTCSSCSSTHHHHHHHHHHHCCC T ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 999998699889983799973159999999999808889 No 3 >3ofq_O 50S ribosomal protein L18; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_O 2wwq_O 3ofr_O* 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O 2i2v_O 2j28_O 2i2t_O* 2qao_O* 2qba_O* 2qbc_O* 2qbe_O 2qbg_O 2qbi_O* ... Probab=100.00 E-value=1.7e-44 Score=283.30 Aligned_cols=116 Identities=42% Similarity=0.635 Sum_probs=112.0 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHH Q ss_conf 87999998998776875057878824999963870999999627975999985021000001346866789999999999 Q gi|254780245|r 3 TKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLV 82 (120) Q Consensus 3 ~k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia 82 (120) +|+..+.+|+.|+|+++++.. +|||+|||||+|||||||||.+++||||+||++++++..++..+|+++|+.||++|| T Consensus 1 nK~~~R~rR~~R~R~ki~~~~--~pRL~V~rSnkhiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la 78 (116) T 3ofq_O 1 DKKSARIRRATRARRKLQELG--ATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVA 78 (116) T ss_dssp CTHHHHHHHHHHHHTTTTTTC--SCEECCCEETTEECCBEECTTSSCCCCBCCSSSHHHHTTCSCSSSTTHHHHTHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCC--CCEEEEEECCCEEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 927889999999999863689--975999970881899999779996899987324444321267877789999999999 Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 99997799799983898631225999999999658789 Q gi|254780245|r 83 ERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 83 ~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120) ++|+++||++|+|||+||+|||||+||||++||+||+| T Consensus 79 ~ra~~~gI~~v~fDr~g~~yhGrvkalad~~Re~Gl~F 116 (116) T 3ofq_O 79 ERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 116 (116) T ss_dssp HHHHHHTCCCCCCCCTTSCTTSTTTTTSSTTTSSSCCC T ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 99998699999976898773269999999999828889 No 4 >2j01_S 50S ribosomal protein L18; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Probab=100.00 E-value=1.8e-43 Score=277.31 Aligned_cols=112 Identities=51% Similarity=0.753 Sum_probs=105.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 88799999899877687505787882499996387099999962797599998502100000134686678999999999 Q gi|254780245|r 2 ATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLL 81 (120) Q Consensus 2 ~~k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~i 81 (120) |+|.+.+.||+.|+|+++++. .+|||+|||||+|||||||||.+++||+++||++++++ .+|+++|+.||++| T Consensus 1 m~k~~~~~rR~~R~R~ki~~~--~~pRL~V~rSnkhiyaQiIdd~~~~tl~s~St~~k~~k-----~~n~~aA~~vG~~i 73 (112) T 2j01_S 1 MARLTAYERRKFRVRNRIKRT--GRLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRAL 73 (112) T ss_dssp ----------CCCCCSCSCCC--SSCEEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCC-----SCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHCCC--CCCEEEEEECCCEEEEEEEECCCCCEEEEEECCCCCCC-----CCHHHHHHHHHHHH T ss_conf 985248999999999997279--98759999708836999997799868521104100135-----88599999999999 Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 999997799799983898631225999999999658789 Q gi|254780245|r 82 VERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 82 a~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120) |++++++||++|+||||||+|||||+||||++||+||+| T Consensus 74 a~ka~~~gI~~vvFDR~g~~yhGrvka~ad~~R~~Gl~F 112 (112) T 2j01_S 74 AEKALALGIKQVAFDRGPYKYHGRVKALAEGAREGGLEF 112 (112) T ss_dssp HHHHHHTSCCCCBCCCSTTCSSSSCCCCSSCTTCC---- T ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 999998699889974799720249999999999838999 No 5 >2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Probab=100.00 E-value=4.8e-42 Score=268.81 Aligned_cols=112 Identities=54% Similarity=0.764 Sum_probs=98.5 Q ss_pred CCCHHHHHHHHHHHHHHHHCCC--CCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHH Q ss_conf 9887999998998776875057--87882499996387099999962797599998502100000134686678999999 Q gi|254780245|r 1 MATKKKVLARRISRIRRHLKSV--SRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVG 78 (120) Q Consensus 1 m~~k~~~~~kR~~R~R~k~k~~--~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG 78 (120) |++.+. .+|+.|+|++++.. ..++|||+|||||+|||||||||.+++||||+||.+++ .++|+++|..|| T Consensus 1 M~~~~~--~rr~~R~r~kir~~~~~~~rpRL~V~rSnkhiyAQiIDd~~~~tl~saSt~~~~------~~~~~~~a~~vG 72 (114) T 2zjr_L 1 MATATT--IRRKLRTRRKVRTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALK------SGNKTDTAAAVG 72 (114) T ss_dssp ---------CHHHHHHHHHHSCSTTTCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCSCC------TTCSSSSHHHHH T ss_pred CCCCHH--HHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEEECCCCCEEEEEECCCHH------CCCCHHHHHHHH T ss_conf 985178--999999998875334668987799997388089999978999799996102010------289678999999 Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 999999997799799983898631225999999999658789 Q gi|254780245|r 79 NLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 79 ~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120) ++||++++++||++|+||||||+||||||||||++||+||+| T Consensus 73 ~~ia~~~~~~gI~~vvFDR~g~~YHGrvkalAd~aR~~Gl~F 114 (114) T 2zjr_L 73 KALAAAAAEKGIKQVVFDRGSYKYHGRVKALADAAREGGLDF 114 (114) T ss_dssp HHHHHHHHTTCCCCCEECCCSSCSCSHHHHHHHHHHHHC--- T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCC T ss_conf 997636888698289986899841029999999999848989 No 6 >1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Probab=100.00 E-value=1.1e-32 Score=213.22 Aligned_cols=103 Identities=25% Similarity=0.269 Sum_probs=94.4 Q ss_pred HHHHHCCCCCCCCEEEEEEECCCEEEEEE--ECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 76875057878824999963870999999--6279759999850210000013468667899999999999999779979 Q gi|254780245|r 15 IRRHLKSVSRGRLRLSVCRSSKHIYGQII--DDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKS 92 (120) Q Consensus 15 ~R~k~k~~~~~~pRL~V~rSnkhiyAQiI--dd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~ 92 (120) .|.++.. ..+|||+||+||+||||||| ||.+++|||||||.+....++....+|++||+++|.++|++++++||++ T Consensus 23 ~R~rl~~--s~kpRLvVr~SNk~I~aQii~~d~~gd~~l~sasS~el~k~g~k~~~~N~~AAy~~G~llakra~~kgi~~ 100 (187) T 1vq8_N 23 QRLRLLK--SGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEE 100 (187) T ss_dssp HHHHHHT--TCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCB T ss_pred HHHHHHC--CCCCEEEEEEECCEEEEEEEEECCCCCEEEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 9999861--89976999983893899999843899989999970506540422587478999999999999998505671 Q ss_pred EEECCC--CCCCHHHHHHHHHHHHHCCCC Q ss_conf 998389--863122599999999965878 Q gi|254780245|r 93 VYFDRG--KHLYCGRIAALADAVRKGGVS 119 (120) Q Consensus 93 v~FDR~--g~~yHGrvka~ad~~R~~Gl~ 119 (120) ++||+| +|.|||||+|+||++|++||+ T Consensus 101 ~vfD~G~~~~~yhgRV~A~akgard~GL~ 129 (187) T 1vq8_N 101 AVLDIGLNSPTPGSKVFAIQEGAIDAGLD 129 (187) T ss_dssp CEEECTTSCCCTTCHHHHHHHHHHHTTCB T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 57722777886437999999999974957 No 7 >2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=99.46 E-value=1.5e-12 Score=93.99 Aligned_cols=95 Identities=21% Similarity=0.204 Sum_probs=86.6 Q ss_pred CCCEEEEEEECCCEEEEEEE--CCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHC-------------- Q ss_conf 88249999638709999996--27975999985021000001346866789999999999999977-------------- Q gi|254780245|r 25 GRLRLSVCRSSKHIYGQIID--DSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKV-------------- 88 (120) Q Consensus 25 ~~pRL~V~rSnkhiyAQiId--d~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~-------------- 88 (120) .+|||+|.+||++|.+||+. ..++.|||+|.|.|..-.++....+|.+||+..|.++|.+++++ T Consensus 47 pK~RlVVR~TNk~ii~Qiv~~~~~GD~vl~sA~S~eL~kyG~k~gl~N~~AAYlTGlL~arR~L~k~~ld~~y~g~~e~~ 126 (297) T 2zkr_n 47 PKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVT 126 (297) T ss_dssp CSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSS T ss_pred CCCEEEEEEECCCEEEEEEEEECCCCEEEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC T ss_conf 86059999837957999988617898999986421376659889987448999999999999987505133325750135 Q ss_pred -------------CCCEEEECCCCCCCH--HHHHHHHHHHHHCCCC Q ss_conf -------------997999838986312--2599999999965878 Q gi|254780245|r 89 -------------GVKSVYFDRGKHLYC--GRIAALADAVRKGGVS 119 (120) Q Consensus 89 -------------gI~~v~FDR~g~~yH--Grvka~ad~~R~~Gl~ 119 (120) |+.++++|-|-.+.. +||.|..-|+-++||. T Consensus 127 g~~~~ve~~~~~~g~f~aiLDiGL~rtt~G~RVFaalKGavDgGl~ 172 (297) T 2zkr_n 127 GDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLS 172 (297) T ss_dssp SCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHHHHHHHHHHTTCB T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCC T ss_conf 6402334334678862699713644466686689875112357746 No 8 >3jyw_E 60S ribosomal protein L5; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_E Probab=99.20 E-value=2.9e-12 Score=92.31 Aligned_cols=94 Identities=27% Similarity=0.251 Sum_probs=80.7 Q ss_pred CCEEEEEEECCCEEEEEEE--CCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHC--------------- Q ss_conf 8249999638709999996--27975999985021000001346866789999999999999977--------------- Q gi|254780245|r 26 RLRLSVCRSSKHIYGQIID--DSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKV--------------- 88 (120) Q Consensus 26 ~pRL~V~rSnkhiyAQiId--d~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~--------------- 88 (120) +|||+|.+||++|.+|||. ..++.|||+|.|.|..-.++....+|.+||+..|.++|.+++++ T Consensus 38 k~R~VVR~TN~~ii~Qiv~~~~~GD~vl~sA~S~eL~kyG~k~g~~N~~AaYlTGlL~arr~l~k~gl~~~~~g~~e~~g 117 (237) T 3jyw_E 38 KYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEG 117 (237) T ss_dssp SSSEECCCCSSCCEEECCCBCSSSBCCSSEEEGGGSTTTSCCSCSCBSHHHHHHHHHHHHCBSCSSSCSSBCSSCSSSSS T ss_pred CCEEEEEEECCCEEEEEEEEECCCCEEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCC T ss_conf 63699998679479999985078999999841656866375689873169999889999999886172454267521477 Q ss_pred ------------CCCEEEECCCCCCCH--HHHHHHHHHHHHCCCC Q ss_conf ------------997999838986312--2599999999965878 Q gi|254780245|r 89 ------------GVKSVYFDRGKHLYC--GRIAALADAVRKGGVS 119 (120) Q Consensus 89 ------------gI~~v~FDR~g~~yH--Grvka~ad~~R~~Gl~ 119 (120) ++.++++|-|-.+.. +||.|..-++-++||+ T Consensus 118 ~~~~~e~~~~~~~~f~aiLDiGL~r~t~G~RVfaalKGavD~Gl~ 162 (237) T 3jyw_E 118 EYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLY 162 (237) T ss_dssp CCCCCSCCCSSCCCCSCCEECCSSCCCTTCHHHHHHHHHHTTSSC T ss_pred CEECCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCC T ss_conf 510222224688871577414654576562046743301146733 No 9 >2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Probab=97.18 E-value=0.0056 Score=37.25 Aligned_cols=87 Identities=23% Similarity=0.195 Sum_probs=66.7 Q ss_pred CEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCHHH Q ss_conf 2499996387099999962797599998502100000134686678999999999999997799799-983898631225 Q gi|254780245|r 27 LRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRGKHLYCGR 105 (120) Q Consensus 27 pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~g~~yHGr 105 (120) -.+.|+.|..|....|. |.+|.+++.+|+-...|++..+ +.-.||..+++.+++++++.|++.| ++=+|-- -|| T Consensus 17 GivhI~~t~NNTiitlT-D~~Gn~i~~~S~G~~gfkg~rk--~t~~Aa~~~a~~~~~k~~~~Gi~~v~V~~kG~G--~GR 91 (129) T 2vqe_K 17 GRAYIHASYNNTIVTIT-DPDGNPITWSSGGVIGYKGSRK--GTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTG--AGR 91 (129) T ss_dssp EEEEEEECSSCEEEEEE-CTTSCEEEECCTTTTTCCSGGG--GSHHHHHHHHHHHHHHHHTTTCCEEEEEEESCC--TTH T ss_pred CEEEEECCCCCEEEEEE-CCCCCEEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC--CCC T ss_conf 28999806798999998-7999999998357311377554--768899999999999999819819999998999--972 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 99999999965878 Q gi|254780245|r 106 IAALADAVRKGGVS 119 (120) Q Consensus 106 vka~ad~~R~~Gl~ 119 (120) -. +.-++...||+ T Consensus 92 ~~-aik~l~~~glk 104 (129) T 2vqe_K 92 EQ-AIRALQASGLQ 104 (129) T ss_dssp HH-HHHHHHTSSSE T ss_pred HH-HHHHHHHCCCE T ss_conf 99-99999878987 No 10 >3ofo_K 30S ribosomal protein S11; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_K* 3iy8_K 2wwl_K 3ofp_K 3i1m_K 1vs7_K* 3e1a_C 3e1c_C 1vs5_K 3i1o_K 3i1q_K 3i1s_K 3i1z_K 3i21_K 3kc4_K 3or9_K 3ora_K 2qal_K* 1p6g_K 1p87_K ... Probab=96.20 E-value=0.016 Score=34.59 Aligned_cols=85 Identities=21% Similarity=0.235 Sum_probs=63.5 Q ss_pred EEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC-CCCCHHH Q ss_conf 499996387099999962797599998502100000134686678999999999999997799799-98389-8631225 Q gi|254780245|r 28 RLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG-KHLYCGR 105 (120) Q Consensus 28 RL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~-g~~yHGr 105 (120) -+.|+.|..|....+.| .+|.+++..|+-...+++..+ +.-.||..+++.+++++++.|++.| ++=+| |. || T Consensus 8 ivhI~~t~NNT~itlTD-~~G~~~~~~S~G~~gfKg~kk--~t~~Aa~~~a~~~~~~~~~~Gi~~v~v~~kG~G~---gr 81 (117) T 3ofo_K 8 VAHIHASFNNTIVTITD-RQGNALGWATAGGSGFRGSRK--STPFAAQVAAERCADAVKEYGIKNLEVMVKGPGP---GR 81 (117) T ss_dssp EEEEEECSSCEEEEEEE-TTCCCCEEEETGGGSCCGGGT--TSHHHHHHHHHHHHTTTGGGCEEEEEEEEESSST---TT T ss_pred EEEEEECCCCEEEEEEC-CCCCEEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC---CH T ss_conf 99999158989999987-999999999478613188767--9937999999999999998399699999979988---77 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 99999999965878 Q gi|254780245|r 106 IAALADAVRKGGVS 119 (120) Q Consensus 106 vka~ad~~R~~Gl~ 119 (120) -.+ .-++...||+ T Consensus 82 ~~~-ik~l~~~gik 94 (117) T 3ofo_K 82 EST-IRALNAAGFR 94 (117) T ss_dssp THH-HHHHHTTTCC T ss_pred HHH-HHHHHHCCCE T ss_conf 999-9999758987 No 11 >2zkq_k 40S ribosomal protein S14E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_K* Probab=95.79 E-value=0.065 Score=30.94 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=60.0 Q ss_pred EEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC--CCCC-- Q ss_conf 499996387099999962797599998502100000134686678999999999999997799799-98389--8631-- Q gi|254780245|r 28 RLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG--KHLY-- 102 (120) Q Consensus 28 RL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~--g~~y-- 102 (120) -+.|+-|..|..+.|. |..|.++++.|+-...+++.... +.--||..+++.+++++++.||+.+ ++=|| +... T Consensus 30 ivhI~as~NNTiitlT-D~~Gn~~~~~SsG~~gfk~~~rk-~t~~AA~~aa~~~~~k~~~~Gik~v~v~vrG~g~~~~kg 107 (151) T 2zkq_k 30 VCHIFASFNDTFVHVT-DLSGKETICRVTGGMKVKADRDE-SSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKT 107 (151) T ss_dssp CEEEEECSSCEEEEEE-CTTCCEEEEEESTTSSCCTTTTT-TSHHHHHHHHHHHHHHTTTTCCCBCCEEEESSCCBTTBC T ss_pred EEEEEECCCCEEEEEE-CCCCCEEEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCC T ss_conf 9999905788499997-49999999985440014546556-732699999999999999849639999998405775578 Q ss_pred --HHHHHHHHHHHHHCCCC Q ss_conf --22599999999965878 Q gi|254780245|r 103 --CGRIAALADAVRKGGVS 119 (120) Q Consensus 103 --HGrvka~ad~~R~~Gl~ 119 (120) .||-.|+ -++...||+ T Consensus 108 pGpGr~~ai-r~l~~~glk 125 (151) T 2zkq_k 108 PGPGAQSAL-RALARSGMK 125 (151) T ss_dssp CCTTHHHHH-HHHHHHTCC T ss_pred CCCCHHHHH-HHHHHCCCE T ss_conf 987578899-889768938 No 12 >3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Probab=95.65 E-value=0.031 Score=32.86 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=65.4 Q ss_pred EEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC-CCCCHHH Q ss_conf 499996387099999962797599998502100000134686678999999999999997799799-98389-8631225 Q gi|254780245|r 28 RLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG-KHLYCGR 105 (120) Q Consensus 28 RL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~-g~~yHGr 105 (120) -+.|+.|..|....|. |.+|.+++..|+-...|++..+ +.-.||..+++.+++++++.|+..| ++=+| |. || T Consensus 31 ivhI~~t~NNTiitlT-D~~Gn~l~~~S~G~~gfkg~rK--~T~~Aa~~aa~~~~~~~~~~gi~~v~V~ikG~G~---GR 104 (140) T 3bbn_K 31 VIHVQASFNNTIVTVT-DVRGRVVSWASAGTCGFRGTKR--GTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGL---GR 104 (140) T ss_dssp EEEEEECSSCEEEEEE-CSSSCEEEEEETTTSSCCTTSC--SSHHHHHHHHTSGGGTSTTTCCCEEEEEEESCST---TS T ss_pred EEEEEECCCCEEEEEE-CCCCCEEEEEECCCEECCCCCC--CCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCC---CH T ss_conf 9999904798899997-5999999999456255168765--8789999999999999997098599999978986---46 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 99999999965878 Q gi|254780245|r 106 IAALADAVRKGGVS 119 (120) Q Consensus 106 vka~ad~~R~~Gl~ 119 (120) .++.-++...||+ T Consensus 105 -~~air~L~~~gl~ 117 (140) T 3bbn_K 105 -DAALRAIRRSGIL 117 (140) T ss_dssp -SHHHHHHHTTTCE T ss_pred -HHHHHHHHHCCCE T ss_conf -9999999868988 No 13 >1s1h_K RP59A, 40S ribosomal protein S14-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1 Probab=94.93 E-value=0.17 Score=28.52 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=50.2 Q ss_pred EEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCC Q ss_conf 499996387099999962797599998502100000134686678999999999999997799799-98389 Q gi|254780245|r 28 RLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSV-YFDRG 98 (120) Q Consensus 28 RL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v-~FDR~ 98 (120) -+.|+.|..|..+.|.|.. |.+++..|+-...+++.... ..--||..+++.+++++++.||+.| ++=|| T Consensus 15 ivhI~~t~NNTivtlTD~~-Gn~~~~~ssgg~~~k~~rkk-~t~~Aa~~aa~~~~~k~~~~Gik~v~V~irG 84 (136) T 1s1h_K 15 VARIYASFNDTFVHVTDLS-GKETIARVTGGMKVKADRDE-SSPYAAMLAAQDVAAKCREVGITAVHVKIRA 84 (136) T ss_dssp EEEEECCSSCCEEEEEETT-SCEEEEEETTTSSCCHHHHH-HCHHHHHHHHHHHHHHHHHTTCCEEEEEEES T ss_pred EEEEEECCCCEEEEEECCC-CCEEEEEEECCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 9999914798799997599-99889996000002357666-7325999999999999987595299999982 No 14 >3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis} Probab=78.43 E-value=2.8 Score=21.22 Aligned_cols=42 Identities=24% Similarity=0.456 Sum_probs=34.9 Q ss_pred HHHHHHHHHCCCCEEEECCCC------------------CCCHHHHHHHHHHHHHCCCCC Q ss_conf 999999997799799983898------------------631225999999999658789 Q gi|254780245|r 79 NLLVERAVKVGVKSVYFDRGK------------------HLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 79 ~~ia~r~~~~gI~~v~FDR~g------------------~~yHGrvka~ad~~R~~Gl~F 120 (120) ..+++.+++.|++-++.|-|= -+|-+-++.|||.+++.|++| T Consensus 350 ~~~ad~a~~~G~e~fvlDDGWf~~r~~~~~~lGdW~~d~~kFP~GLk~Lad~vh~~Gmkf 409 (745) T 3mi6_A 350 MTIVNQAKRLGIEMFVLDDGWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGMKF 409 (745) T ss_dssp HHHHHHHHHHTCCEEEECTTCBTTCSSTTSCTTCCSBCTTTCTTHHHHHHHHHHHTTCEE T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEECCHHHCCCCHHHHHHHHHHCCCEE T ss_conf 999999986598699994761157888756665402264233765799999998769879 No 15 >1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Probab=73.61 E-value=5 Score=19.77 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=30.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 789999999999999977997999838986312259999999996587 Q gi|254780245|r 71 IVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGV 118 (120) Q Consensus 71 i~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl 118 (120) .+.|..+|+.||+. |+. ++| ||.. |--.++|+++.++|= T Consensus 55 ~~~A~~LG~~LA~~----g~~-lV~--GGg~--GlMgava~ga~~~gG 93 (217) T 1wek_A 55 YEAGYRLGRALAEA----GFG-VVT--GGGP--GVMEAVNRGAYEAGG 93 (217) T ss_dssp HHHHHHHHHHHHHH----TCE-EEE--CSCS--HHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHC----CCE-EEE--CCCH--HHHHHHHHHHHHCCC T ss_conf 99999999999987----999-997--9867--899899999986699 No 16 >2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* Probab=71.15 E-value=5.7 Score=19.43 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=29.3 Q ss_pred HHHHHHHHHCCCCEEEEC---CCCC--------CC--------HHHHHHHHHHHHHCCCCC Q ss_conf 999999997799799983---8986--------31--------225999999999658789 Q gi|254780245|r 79 NLLVERAVKVGVKSVYFD---RGKH--------LY--------CGRIAALADAVRKGGVSF 120 (120) Q Consensus 79 ~~ia~r~~~~gI~~v~FD---R~g~--------~y--------HGrvka~ad~~R~~Gl~F 120 (120) +..++.++++|.+-++|- .-|| .| .--|++|++++|+.||+| T Consensus 108 ~~W~~~ak~AGaky~vlTaKHHDGF~lwdSk~t~~n~~~~~~krDiv~el~~A~rk~Glk~ 168 (455) T 2zxd_A 108 QEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRF 168 (455) T ss_dssp HHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEE T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE T ss_conf 9999999984997699767733774236899999877688989737999999998669848 No 17 >3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482} Probab=70.28 E-value=5.1 Score=19.71 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=32.2 Q ss_pred HHHHHHHHHCCCCEEEEC---CCCC---------------CC-H---HHHHHHHHHHHHCCCCC Q ss_conf 999999997799799983---8986---------------31-2---25999999999658789 Q gi|254780245|r 79 NLLVERAVKVGVKSVYFD---RGKH---------------LY-C---GRIAALADAVRKGGVSF 120 (120) Q Consensus 79 ~~ia~r~~~~gI~~v~FD---R~g~---------------~y-H---Grvka~ad~~R~~Gl~F 120 (120) +..++.++++|.+-|+|- .-|| .| + --|++|++++|+.||+| T Consensus 62 ~qWv~~~k~aGakyvvltaKHHDGF~lW~S~~t~~~v~~s~~~~~krDiv~el~~A~rk~Glk~ 125 (443) T 3gza_A 62 DQWVQAAKAAGCKFAVLTATHETGFGLWQSDVNPYCLKAVKWRDGKGDIVRDFVNSCRKYGLQP 125 (443) T ss_dssp HHHHHHHHTTTCSEEEEESCCSSCCBSSCCSSCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEE T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCE T ss_conf 9999999986996899854536886673799999765556564888687999999998709846 No 18 >3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein structure initiative; 1.90A {Bacteroides thetaiotaomicron} Probab=65.44 E-value=7.5 Score=18.72 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=32.6 Q ss_pred HHHHHHHHHCCCCEEEEC---CCCC--------CCH-----------HHHHHHHHHHHHCCCCC Q ss_conf 999999997799799983---8986--------312-----------25999999999658789 Q gi|254780245|r 79 NLLVERAVKVGVKSVYFD---RGKH--------LYC-----------GRIAALADAVRKGGVSF 120 (120) Q Consensus 79 ~~ia~r~~~~gI~~v~FD---R~g~--------~yH-----------Grvka~ad~~R~~Gl~F 120 (120) +..++.++++|-+-++|- ..|| .|. --|++|++++|+.||+| T Consensus 57 ~~W~~~~k~aGaky~vltakHHDGF~lw~S~~t~~~~~~s~~~g~krDlv~el~~A~rk~Glk~ 120 (469) T 3eyp_A 57 RQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKA 120 (469) T ss_dssp HHHHHHHHHTTCCEEEEEEECTTCCBSSCCTTCSSBGGGSSGGGGTCCHHHHHHHHHHHHTCEE T ss_pred HHHHHHHHHCCCCEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEE T ss_conf 9999999986996899652105756677899998765457877886449999999998619736 No 19 >2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Probab=61.26 E-value=7.6 Score=18.66 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=26.1 Q ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 9999997799799983898631225999999999658789 Q gi|254780245|r 81 LVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 81 ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120) =|..+...||.+|+|-...+.---......+-++++||++ T Consensus 110 Ca~~I~~~GIk~Vvy~~~~~~~~~~~~~~~~~l~~aGI~v 149 (178) T 2w4l_A 110 CAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTF 149 (178) T ss_dssp HHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHHTCEE T ss_pred HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEE T ss_conf 9999999498989996467898077799999999889999 No 20 >1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Probab=54.47 E-value=12 Score=17.57 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=29.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 789999999999999977997999838986312259999999996587 Q gi|254780245|r 71 IVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGV 118 (120) Q Consensus 71 i~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl 118 (120) .+.|..+|+.||+ .|+ .| |- ||+ -|--.|+|+++.++|- T Consensus 44 ~~~a~elG~~La~----~G~-~V-~~-GG~--~GlM~a~a~ga~~~GG 82 (195) T 1rcu_A 44 RDICLELGRTLAK----KGY-LV-FN-GGR--DGVMELVSQGVREAGG 82 (195) T ss_dssp HHHHHHHHHHHHH----TTC-EE-EE-CCS--SHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHH----CCC-EE-EC-CCH--HHHHHHHHHHHHHCCC T ss_conf 9999999999998----799-99-94-872--7488999998886299 No 21 >3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} Probab=51.26 E-value=13 Score=17.26 Aligned_cols=45 Identities=16% Similarity=0.069 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHCCCCEEEECCC---CCCCHHHHHHHHHHHHHCCCCC Q ss_conf 99999999999779979998389---8631225999999999658789 Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRG---KHLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~---g~~yHGrvka~ad~~R~~Gl~F 120 (120) ..|..+++.+.++|..+|.|=-+ ..-...|...|-+++++.|+.| T Consensus 113 ~a~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~ 160 (289) T 3g85_A 113 KMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKI 160 (289) T ss_dssp HHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBC T ss_pred HHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 999999999997499734114567678389999860036788729986 No 22 >3mo4_A Alpha-1,3/4-fucosidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: TYR; 1.90A {Bifidobacterium longum subsp} Probab=49.12 E-value=5.4 Score=19.56 Aligned_cols=41 Identities=15% Similarity=0.332 Sum_probs=31.3 Q ss_pred HHHHHHHHCCCCEEEEC---CCCC---------------CCH----HHHHHHHHHHHHCCCCC Q ss_conf 99999997799799983---8986---------------312----25999999999658789 Q gi|254780245|r 80 LLVERAVKVGVKSVYFD---RGKH---------------LYC----GRIAALADAVRKGGVSF 120 (120) Q Consensus 80 ~ia~r~~~~gI~~v~FD---R~g~---------------~yH----Grvka~ad~~R~~Gl~F 120 (120) ..++.++++|.+-|++- .-|| .|. --|++|++++|+.||+| T Consensus 68 ~W~~~~k~AGakY~vltaKHHDGF~lW~S~~t~~~v~~sp~~~~krDiv~el~~A~rk~Glk~ 130 (480) T 3mo4_A 68 QWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKF 130 (480) T ss_dssp HHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEE T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE T ss_conf 999999985994899815727865573799999864357766888678999999998719714 No 23 >3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli} Probab=48.42 E-value=15 Score=16.99 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=33.0 Q ss_pred HHHHHHHHHHHHCCCCEEEECCCC---CCCHHHHHHHHHHHHHCCCCC Q ss_conf 999999999997799799983898---631225999999999658789 Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRGK---HLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~g---~~yHGrvka~ad~~R~~Gl~F 120 (120) ..|..+++.+.++|..+|.|=.+. .-...|...|.+++.+.|+.+ T Consensus 117 ~~~~~~~~~L~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~l~~~~~~~ 164 (301) T 3miz_A 117 QGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTE 164 (301) T ss_dssp HHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCG T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 999999999998189759998478545641466599999999859986 No 24 >2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* Probab=44.74 E-value=6.9 Score=18.91 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=28.2 Q ss_pred HHHHHHHHCCCCEEEEC---CCCC--------CC--------HHHHHHHHHHHHHCCCCC Q ss_conf 99999997799799983---8986--------31--------225999999999658789 Q gi|254780245|r 80 LLVERAVKVGVKSVYFD---RGKH--------LY--------CGRIAALADAVRKGGVSF 120 (120) Q Consensus 80 ~ia~r~~~~gI~~v~FD---R~g~--------~y--------HGrvka~ad~~R~~Gl~F 120 (120) ..++.++++|-+-++|- .-|| .| .--|++|++++|+.||+| T Consensus 82 ~W~~l~k~aGakY~v~takHHDGF~lwdS~~t~~n~~~~~~krDiv~el~~A~r~~Glk~ 141 (450) T 2wvv_A 82 KWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDV 141 (450) T ss_dssp HHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEE T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE T ss_conf 999999985996799767733775344688999733368877770899999998438740 No 25 >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Probab=44.37 E-value=17 Score=16.62 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=31.7 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 999999999999779979998389863122599999999965878 Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVS 119 (120) Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~ 119 (120) .-+|..+|+++.+.|.+-+..||+.- +++++++.+++.|-+ T Consensus 17 ~GIG~aiA~~la~~Ga~V~i~~r~~~----~l~~~~~~i~~~g~~ 57 (252) T 3h7a_A 17 DYIGAEIAKKFAAEGFTVFAGRRNGE----KLAPLVAEIEAAGGR 57 (252) T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSGG----GGHHHHHHHHHTTCE T ss_pred HHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHHCCCE T ss_conf 58999999999987999999989999----999999999963983 No 26 >3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} Probab=37.68 E-value=22 Score=15.99 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 9999999999779979998389863122599999999965878 Q gi|254780245|r 77 VGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVS 119 (120) Q Consensus 77 vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~ 119 (120) ....+.+.+.++|++.|.|--|.+- .++.+-+|++||. T Consensus 70 ~~~~~v~e~~~~g~k~vw~q~G~~~-----e~~~~~a~~~Gi~ 107 (122) T 3ff4_A 70 NQLSEYNYILSLKPKRVIFNPGTEN-----EELEEILSENGIE 107 (122) T ss_dssp HHGGGHHHHHHHCCSEEEECTTCCC-----HHHHHHHHHTTCE T ss_pred HHHHHHHHHHHCCCCEEEEECCCCC-----HHHHHHHHHCCCE T ss_conf 9899999998539999999369879-----9999999996997 No 27 >3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea} Probab=37.59 E-value=22 Score=15.98 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHHH-HHHCCCCEEEECCCCCCC----HHH-----------HHHHHHHHHHCCCCC Q ss_conf 78999999999999-997799799983898631----225-----------999999999658789 Q gi|254780245|r 71 IVAATAVGNLLVER-AVKVGVKSVYFDRGKHLY----CGR-----------IAALADAVRKGGVSF 120 (120) Q Consensus 71 i~aA~~vG~~ia~r-~~~~gI~~v~FDR~g~~y----HGr-----------vka~ad~~R~~Gl~F 120 (120) -+......+.+++. ++..|++-|+.|-|=+.. .|. +++|+|-+++.|++| T Consensus 25 e~~i~~~~~~~~~~g~~~~G~~~~~iDdGW~~~~~~~~g~~~~~~~kFP~Gl~~l~~~i~~~G~~~ 90 (397) T 3a5v_A 25 EQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERESSKTLLADPTKFPRGIKPLVDDIHNLGLKA 90 (397) T ss_dssp HHHHHHHHHHHHHHTHHHHTCCEEECCSSCBCSSCCTTSCCCBCTTTCTTCHHHHHHHHHHTTCEE T ss_pred HHHHHHHHHHHHHCCCHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEE T ss_conf 999999999999768431298799982886678888888734373337633899999999769855 No 28 >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Probab=35.98 E-value=21 Score=16.11 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=34.7 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 99999999999999779979998389863122599999999965878 Q gi|254780245|r 73 AATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVS 119 (120) Q Consensus 73 aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~ 119 (120) ++.-+|..+|+.+.+.|-+-+..||+. .++.++++.+.+.|-+ T Consensus 52 as~GIG~aiA~~la~~Ga~Vvi~~r~~----~~l~~~~~~l~~~g~~ 94 (285) T 2c07_A 52 AGRGIGREIAKMLAKSVSHVICISRTQ----KSCDSVVDEIKSFGYE 94 (285) T ss_dssp TTSHHHHHHHHHHTTTSSEEEEEESSH----HHHHHHHHHHHTTTCC T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHHCCCC T ss_conf 887899999999998699999997999----9999999999963994 No 29 >1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} SCOP: c.129.1.1 Probab=35.32 E-value=24 Score=15.76 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 789999999999999977997999838986312259999999996587 Q gi|254780245|r 71 IVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGV 118 (120) Q Consensus 71 i~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl 118 (120) -+.|..+|+.||+ .|+ .+++ ||+. |--.+++++++++|= T Consensus 19 ~~~a~~lG~~La~----~g~-~lv~--GGg~--G~M~a~a~ga~~~gg 57 (171) T 1weh_A 19 YARWVRYGEVLAE----EGF-GLAC--GGYQ--GGMEALARGVKAKGG 57 (171) T ss_dssp HHHHHHHHHHHHH----TTE-EEEE--CCSS--THHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHH----CCC-EEEE--CCCH--HHHHHHHHHHHHCCC T ss_conf 9999999999998----899-8998--9954--577999988986588 No 30 >1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1 Probab=34.28 E-value=25 Score=15.66 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=34.1 Q ss_pred HHHHHHHHHHHHHH-HHHCCCCEEEECCCCC---------------CCHHHHHHHHHHHHHCCCCC Q ss_conf 78999999999999-9977997999838986---------------31225999999999658789 Q gi|254780245|r 71 IVAATAVGNLLVER-AVKVGVKSVYFDRGKH---------------LYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 71 i~aA~~vG~~ia~r-~~~~gI~~v~FDR~g~---------------~yHGrvka~ad~~R~~Gl~F 120 (120) -+........+++. +++.|++-++.|-|=+ +|-+-+++++|-+++.|++| T Consensus 25 e~~~~~~~d~~a~~gl~~~G~e~~viDdGW~~~~~d~~Gdw~~d~~kFP~Gl~~l~~~~~~~G~~~ 90 (362) T 1uas_A 25 EQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKL 90 (362) T ss_dssp HHHHHHHHHHHHHTSHHHHTCCEEECCSSCBCSSCCTTSCCCBCTTTCTTCHHHHHHHHHHTTCEE T ss_pred HHHHHHHHHHHHHCCCHHHCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCC T ss_conf 999999999999768353197899983897888878788851171004633899999999759754 No 31 >2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Probab=34.15 E-value=14 Score=17.16 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=24.5 Q ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 9999997799799983898631225999999999658789 Q gi|254780245|r 81 LVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 81 ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120) =+..+...||++|+|--. |.-++. -.+-++++|+++ T Consensus 136 Ca~~Ii~aGIkrVVy~~~-y~~~~~---~~~~l~~~gIev 171 (184) T 2hvw_A 136 CTKALLQAGVKKITYNTA-YRIHPF---AIELMTQKEVEY 171 (184) T ss_dssp HHHHHHHHTEEEEEEEEC-CSCCHH---HHHHHHHHTCEE T ss_pred HHHHHHHCCCCEEEECCC-CCCCHH---HHHHHHHCCCEE T ss_conf 999999819898997706-689809---999999879989 No 32 >2jui_A PLNE; ampiphilic alpha helix, toxin; NMR {Lactobacillus plantarum} Probab=34.14 E-value=17 Score=16.60 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.2 Q ss_pred ECCCCCCCHHHHHHHHHHHHH Q ss_conf 838986312259999999996 Q gi|254780245|r 95 FDRGKHLYCGRIAALADAVRK 115 (120) Q Consensus 95 FDR~g~~yHGrvka~ad~~R~ 115 (120) |.||||-|---|.-+.|++-. T Consensus 1 fnrggynfgksvrhvvdaigs 21 (33) T 2jui_A 1 FNRGGYNFGKSVRHVVDAIGS 21 (33) T ss_dssp CCSCSCCSSHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHH T ss_conf 986644532538999998755 No 33 >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, human, structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Probab=31.44 E-value=27 Score=15.38 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=35.0 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 99999999999999779979998389863122599999999965878 Q gi|254780245|r 73 AATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVS 119 (120) Q Consensus 73 aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~ 119 (120) ++.-+|..+|++..+.|.+-+..||+.- ++..+++.+++.|.+ T Consensus 39 as~GIG~a~A~~la~~Ga~V~l~~r~~~----~l~~~~~~l~~~g~~ 81 (272) T 1yb1_A 39 AGHGIGRLTAYEFAKLKSKLVLWDINKH----GLEETAAKCKGLGAK 81 (272) T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHHHTTCC T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHHCCCC T ss_conf 5769999999999987998999989999----999999999854993 No 34 >1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A* Probab=26.67 E-value=33 Score=14.88 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=18.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 66789999999999999977997 Q gi|254780245|r 69 ANIVAATAVGNLLVERAVKVGVK 91 (120) Q Consensus 69 ~ni~aA~~vG~~ia~r~~~~gI~ 91 (120) ++.+.|..+|+.+|+.++++|-. T Consensus 278 g~~~~a~~lG~~la~~Ll~~Ga~ 300 (313) T 1gtk_A 278 GAPQDAEQMGISLAEELLNNGAR 300 (313) T ss_dssp ECGGGHHHHHHHHHHHHHHTTHH T ss_pred ECHHHHHHHHHHHHHHHHHHCHH T ss_conf 47899999999999999984899 No 35 >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, antibiotic biosynthesis, NADPH; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Probab=26.23 E-value=34 Score=14.83 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=31.7 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 999999999999977997999838986312259999999996587 Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGV 118 (120) Q Consensus 74 A~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl 118 (120) +.-+|..+|++..+.|-+-+..||+. .++.++++.+++.|- T Consensus 16 s~GIG~aiA~~la~~Ga~V~~~~r~~----~~l~~~~~~l~~~g~ 56 (247) T 2jah_A 16 SSGIGEATARALAAEGAAVAIAARRV----EKLRALGDELTAAGA 56 (247) T ss_dssp SSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHTTC T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHHCCC T ss_conf 87899999999998799899998989----999999999985499 No 36 >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Probab=25.42 E-value=35 Score=14.74 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=35.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 899999999999999779979998389863122599999999965878 Q gi|254780245|r 72 VAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVS 119 (120) Q Consensus 72 ~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~ 119 (120) -++.-+|..+|+.+.+.|-+-+..||+. -++..+++.+++.|.+ T Consensus 35 Gas~GIG~aiA~~la~~Ga~Vv~~~r~~----~~l~~~~~~i~~~g~~ 78 (270) T 3ftp_A 35 GASRGIGRAIALELARRGAMVIGTATTE----AGAEGIGAAFKQAGLE 78 (270) T ss_dssp TCSSHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHHHHHHTCC T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHHCCCC T ss_conf 8685899999999998699999997988----9999999999965994 No 37 >3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} Probab=24.80 E-value=36 Score=14.67 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHCCCCEEEECCC--CC-CCHHHHHHHHHHHHHCCCC Q ss_conf 99999999999779979998389--86-3122599999999965878 Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDRG--KH-LYCGRIAALADAVRKGGVS 119 (120) Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR~--g~-~yHGrvka~ad~~R~~Gl~ 119 (120) ..|.++++.+.+.|..+|.|--+ ++ ...-|.+.|-+++++.|+. T Consensus 113 ~~~~~a~~~L~~~g~~~I~~i~~~~~~~~~~~R~~Gf~~a~~~~gl~ 159 (288) T 3gv0_A 113 AYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLT 159 (288) T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCE T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 99999999998629960899648754323878889999999983998 No 38 >2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} Probab=24.49 E-value=36 Score=14.64 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=34.7 Q ss_pred HHHHHHHHHHHHHCCCCEEEEC---CCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 9999999999997799799983---898631225999999999658789 Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFD---RGKHLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FD---R~g~~yHGrvka~ad~~R~~Gl~F 120 (120) ...|.++++.+.+.|-..+.|= ....-.+-|...|-+++.+.|+++ T Consensus 165 ~~~~~~a~~~L~~~G~~ri~~i~~~~~~~~~~~R~~gf~~~~~~~~l~~ 213 (332) T 2o20_A 165 HLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEF 213 (332) T ss_dssp HHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCC T ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 9999999999998189851176278665068899999999999859999 No 39 >2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Probab=23.92 E-value=37 Score=14.57 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=31.9 Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCH-HHHHHHHHHHHHCCCCC Q ss_conf 9999999977997999838986312-25999999999658789 Q gi|254780245|r 79 NLLVERAVKVGVKSVYFDRGKHLYC-GRIAALADAVRKGGVSF 120 (120) Q Consensus 79 ~~ia~r~~~~gI~~v~FDR~g~~yH-Grvka~ad~~R~~Gl~F 120 (120) +.|.+.+.+.+|+.|++++..-.|. -|-+.+.+.+++.|++| T Consensus 114 ~~l~~L~~~~~i~~V~~n~~~~~~~~~rD~~v~~~l~~~~i~~ 156 (543) T 2wq7_A 114 EVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRV 156 (543) T ss_dssp HHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEE T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999976998899943357899999999988776531021 No 40 >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Probab=23.85 E-value=38 Score=14.56 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=28.9 Q ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 9999999999999779979998389863122599999999965878 Q gi|254780245|r 74 ATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVS 119 (120) Q Consensus 74 A~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~ 119 (120) +.-+|..+|+...+.|.+-+..||+. .++.++++.+++.|-+ T Consensus 11 s~GIG~aiA~~la~~Ga~V~i~~r~~----~~~~~~~~~l~~~g~~ 52 (256) T 1geg_A 11 GQGIGKAIALRLVKDGFAVAIADYND----ATAKAVASEINQAGGH 52 (256) T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHTTCC T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHHCCCC T ss_conf 55899999999998799899997989----9999999999963992 No 41 >1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A* Probab=23.71 E-value=38 Score=14.55 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=31.9 Q ss_pred HHHHHHHHHHH-HHHCCCCEEEECCCC---------------CCCHHHHHHHHHHHHHCCCCC Q ss_conf 99999999999-997799799983898---------------631225999999999658789 Q gi|254780245|r 74 ATAVGNLLVER-AVKVGVKSVYFDRGK---------------HLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 74 A~~vG~~ia~r-~~~~gI~~v~FDR~g---------------~~yHGrvka~ad~~R~~Gl~F 120 (120) -......|+++ ++..|++-|+.|-|= .+|-+=+++++|.+++.|++| T Consensus 31 i~~~~d~l~~~gl~~~G~~~~~iDDGW~~~~~~~~G~~~~~~~kFP~Glk~l~d~i~~~G~k~ 93 (417) T 1szn_A 31 FLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKL 93 (417) T ss_dssp HHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCBTTBCCBCTTTCTTHHHHHHHHHHHTTCEE T ss_pred HHHHHHHHHHCCCHHCCCEEEEECCCCCCCCCCCCCCEEECHHCCCCCHHHHHHHHHHCCCEE T ss_conf 999999999869522097799988886778888888653371006621799999999779833 No 42 >3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} Probab=23.56 E-value=38 Score=14.53 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=34.0 Q ss_pred HHHHHHHHHHHHCCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 9999999999977997999838---98631225999999999658789 Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFDR---GKHLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FDR---~g~~yHGrvka~ad~~R~~Gl~F 120 (120) ..|..+++.+.++|..++.|=- .......|...|.+++.+.|+++ T Consensus 117 ~~~~~~~~~L~~~G~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~ 164 (303) T 3kke_A 117 KGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRS 164 (303) T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCC T ss_pred HHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 999999999998520557641588766079999999999999859985 No 43 >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Probab=23.30 E-value=39 Score=14.50 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=33.3 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 9999999999999977997999838986312259999999996587 Q gi|254780245|r 73 AATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGV 118 (120) Q Consensus 73 aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl 118 (120) ++.-||..+|+++.+.|.+-+..||+. .++.++++.+++.|. T Consensus 40 as~GIG~aiA~~la~~Ga~Vv~~~r~~----~~l~~~~~~l~~~~~ 81 (279) T 1xg5_A 40 ASGGIGAAVARALVQQGLKVVGCARTV----GNIEELAAECKSAGY 81 (279) T ss_dssp TTSHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHHHTTC T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHHCCC T ss_conf 787899999999998799999997988----999999999985699 No 44 >1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Probab=22.94 E-value=18 Score=16.42 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=20.9 Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 99999779979998389863122599999999965878 Q gi|254780245|r 82 VERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVS 119 (120) Q Consensus 82 a~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~ 119 (120) +..+...||++|+|--....-++. -.+-++++||+ T Consensus 136 a~~i~~~gI~~V~~~~~~~~~~~~---~~~~l~~~gI~ 170 (193) T 1vq2_A 136 AKAIAQSGIKKLVYCETYDKNKPG---WDDILRNAGIE 170 (193) T ss_dssp HHHHHHHTCCEEEEEECCTTCCTT---TTHHHHHTTCE T ss_pred HHHHHHHCCCEEEEEECCCCCCHH---HHHHHHHCCCE T ss_conf 999999798989996289995379---99999987997 No 45 >3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Probab=22.77 E-value=39 Score=14.44 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=33.6 Q ss_pred HHHHHHHHHHHHCCCCEEEEC--CCCC--CCHHHHHHHHHHHHHCCCCC Q ss_conf 999999999997799799983--8986--31225999999999658789 Q gi|254780245|r 76 AVGNLLVERAVKVGVKSVYFD--RGKH--LYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 76 ~vG~~ia~r~~~~gI~~v~FD--R~g~--~yHGrvka~ad~~R~~Gl~F 120 (120) ..|.++++.+.+.|...|.|= .... .-+-|..+|.+++.+.|+.+ T Consensus 171 ~~~~~a~~~L~~~G~r~i~~i~~~~~~~~~~~~R~~gf~~~~~~~~~~~ 219 (344) T 3kjx_A 171 RAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEI 219 (344) T ss_dssp HHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCC T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC T ss_conf 9999999999985997399991588654117789999999999729965 No 46 >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.3A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Probab=22.35 E-value=40 Score=14.39 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=10.6 Q ss_pred HHHHHHHHHHHCCCCEEEECCC Q ss_conf 9999999999779979998389 Q gi|254780245|r 77 VGNLLVERAVKVGVKSVYFDRG 98 (120) Q Consensus 77 vG~~ia~r~~~~gI~~v~FDR~ 98 (120) .|.-||..+.++|.+-.+|||. T Consensus 16 MG~~mA~nL~~~G~~V~v~drt 37 (474) T 2iz1_A 16 MGKNLALNVESRGYTVAIYNRT 37 (474) T ss_dssp HHHHHHHHHHHTTCCEEEECSS T ss_pred HHHHHHHHHHHCCCEEEEEECC T ss_conf 8999999999679917999399 No 47 >2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A Probab=22.13 E-value=41 Score=14.36 Aligned_cols=20 Identities=45% Similarity=0.654 Sum_probs=17.3 Q ss_pred CCCHHHHHHHHHHHHHHHHH Q ss_conf 86678999999999999997 Q gi|254780245|r 68 GANIVAATAVGNLLVERAVK 87 (120) Q Consensus 68 ~~ni~aA~~vG~~ia~r~~~ 87 (120) +-+|+.|..+|+.|.|++++ T Consensus 54 gldi~~aT~~GkqiveriL~ 73 (73) T 2zko_A 54 GLDIETATRAGKQIVERILK 73 (73) T ss_dssp TCCHHHHHHHHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHHHHHHC T ss_conf 40306888878999999859 No 48 >3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} Probab=21.97 E-value=41 Score=14.34 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=33.7 Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCC-CHHHHHHHHHHHHHCCCCC Q ss_conf 999999999999779979998389863-1225999999999658789 Q gi|254780245|r 75 TAVGNLLVERAVKVGVKSVYFDRGKHL-YCGRIAALADAVRKGGVSF 120 (120) Q Consensus 75 ~~vG~~ia~r~~~~gI~~v~FDR~g~~-yHGrvka~ad~~R~~Gl~F 120 (120) +..|.++++.+.++|..+|.|-..+.. -.-|...|.+++.+.|++. T Consensus 103 ~~~~~~a~~~L~~~G~~~i~~~~~~~~~~~~R~~gf~~~~~~~~~~~ 149 (280) T 3gyb_A 103 FRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEP 149 (280) T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCC T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999999972984676301232178999888877899729974 No 49 >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Probab=21.50 E-value=42 Score=14.28 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=9.8 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 999999999977997999838986 Q gi|254780245|r 77 VGNLLVERAVKVGVKSVYFDRGKH 100 (120) Q Consensus 77 vG~~ia~r~~~~gI~~v~FDR~g~ 100 (120) +|..+++.+.+.|.+-++++|+.. T Consensus 16 iG~~l~~~L~~~g~~V~~l~R~~~ 39 (313) T 1qyd_A 16 IGKRIVNASISLGHPTYVLFRPEV 39 (313) T ss_dssp THHHHHHHHHHTTCCEEEECCSCC T ss_pred HHHHHHHHHHHCCCEEEEEECCCC T ss_conf 999999999978896999989974 No 50 >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Probab=21.35 E-value=42 Score=14.26 Aligned_cols=40 Identities=18% Similarity=0.374 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHC Q ss_conf 99999999999999779979998389863122599999999965 Q gi|254780245|r 73 AATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKG 116 (120) Q Consensus 73 aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~ 116 (120) ++.-+|..+|+++.+.|.+-+..||+. .++..+++.+.+. T Consensus 15 as~GIG~aia~~la~~G~~Vi~~~r~~----~~l~~~~~~l~~~ 54 (250) T 3nyw_A 15 ASQGIGAVIAAGLATDGYRVVLIARSK----QNLEKVHDEIMRS 54 (250) T ss_dssp TTSHHHHHHHHHHHHHTCEEEEEESCH----HHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHHH T ss_conf 973999999999998799899998989----9999999999983 No 51 >3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Probab=20.97 E-value=16 Score=16.79 Aligned_cols=63 Identities=16% Similarity=-0.002 Sum_probs=30.7 Q ss_pred CEEEEEEECCCCEEEEEEEECCCH-------------HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCH Q ss_conf 099999962797599998502100-------------0001346866789999999999999977997999838986312 Q gi|254780245|r 37 HIYGQIIDDSIGHTLVSASSLNEP-------------LRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYC 103 (120) Q Consensus 37 hiyAQiIdd~~~~tl~saST~~k~-------------~~~~~~~~~ni~aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yH 103 (120) -||+|+ ++..+-.|+++|...+ .-+.++. -| +.|-.++-.+|..+--.=...+.|||-.|-|. T Consensus 10 EiH~qL--~T~~KlFc~c~~~~~~~~pn~~~~~v~~~~pg~lP~-ln-~~av~~a~~~~~al~~~i~~~~~f~RK~y~y~ 85 (482) T 3al0_B 10 EIHVQL--STKTKAFCSCPADVFELPPNTAICPVCTGQPGALPV-PN-EEMIRFAVKTALALNCKIHKYSRFDRKNYFYP 85 (482) T ss_dssp EEEEEC--CCSBCSSSSSBSCCTTCCTTSSCCTTTTTCTTCCCC-CB-HHHHHHHHHHHHHTTCCBCSEECCEEEECCBT T ss_pred EEEEEE--CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC-CC-HHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC T ss_conf 987771--799776789988656889845527153159998777-79-99999999999982984254644121110379 No 52 >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Probab=20.66 E-value=44 Score=14.18 Aligned_cols=43 Identities=28% Similarity=0.346 Sum_probs=31.8 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 99999999999999779979998389863122599999999965878 Q gi|254780245|r 73 AATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVS 119 (120) Q Consensus 73 aA~~vG~~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~ 119 (120) ++.-+|..+|+.+.+.|.+-+..||+. ..+..+++.+++.|-+ T Consensus 20 as~GIG~aia~~la~~Ga~V~~~~~~~----~~~~~~~~~l~~~g~~ 62 (256) T 3gaf_A 20 AAAGIGRAIAGTFAKAGASVVVTDLKS----EGAEAVAAAIRQAGGK 62 (256) T ss_dssp CSSHHHHHHHHHHHHHTCEEEEEESSH----HHHHHHHHHHHHTTCC T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHHHHHCCCC T ss_conf 676899999999998799999997988----9999999999964993 No 53 >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A Probab=20.23 E-value=45 Score=14.12 Aligned_cols=35 Identities=11% Similarity=0.304 Sum_probs=25.9 Q ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 9999997799799983898631225999999999658789 Q gi|254780245|r 81 LVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 (120) Q Consensus 81 ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F 120 (120) +.+.+.++|+..+.|.-|.+ =.++++.++++|+.| T Consensus 86 ~v~e~~~~g~~~v~~q~G~~-----~~e~~~~a~~~Gi~v 120 (140) T 1iuk_A 86 HLPEVLALRPGLVWLQSGIR-----HPEFEKALKEAGIPV 120 (140) T ss_dssp THHHHHHHCCSCEEECTTCC-----CHHHHHHHHHTTCCE T ss_pred HHHHHHHCCCCEEEECCCCC-----CHHHHHHHHHCCCEE T ss_conf 99999962989899898968-----999999999959979 Done!