HHSEARCH alignment of GI: 254780245 and SCOP domain: d1vqon1

Alignment
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00  E-value=5.6e-34  Score=219.56  Aligned_cols=110  Identities=26%  Similarity=0.285  Sum_probs=97.2

Q ss_pred             HHHHHHHH----HHHHCCCCCCCCEEEEEEECCCEEEEEE--ECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99899877----6875057878824999963870999999--62797599998502100000134686678999999999
Q gi|254780245|r    8 LARRISRI----RRHLKSVSRGRLRLSVCRSSKHIYGQII--DDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLL   81 (120)
Q Consensus         8 ~~kR~~R~----R~k~k~~~~~~pRL~V~rSnkhiyAQiI--dd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~i   81 (120)
                      +.||..++    |.++..  ..+|||+||+||+|||||||  ||.+++||||+||.+....++....+|++||+.+|.++
T Consensus        11 RRRRe~kT~y~~R~rl~~--s~kpRLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~~~~N~~AAy~~G~li   88 (186)
T d1vqon1          11 RRRREARTDYHQRLRLLK--SGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLA   88 (186)
T ss_dssp             HHHHTTCCCHHHHHHHHT--TCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCSCSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCEEEEEEEECCCCCEEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             999864110888888733--899769999958915999988448999799997043255420004763777998867999


Q ss_pred             HHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             99999779979998389--863122599999999965878
Q gi|254780245|r   82 VERAVKVGVKSVYFDRG--KHLYCGRIAALADAVRKGGVS  119 (120)
Q Consensus        82 a~r~~~~gI~~v~FDR~--g~~yHGrvka~ad~~R~~Gl~  119 (120)
                      |++++++||++|+||+|  ||.|||||+|+||++||+||+
T Consensus        89 A~ra~~~gi~~vvfD~G~~~~~yhgRV~A~akgard~GL~  128 (186)
T d1vqon1          89 GLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLD  128 (186)
T ss_dssp             HHHHHHTTCCBCEEECTTSCCCTTCHHHHHHHHHHHTTCB
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             9999862556138850777787652299999999966916


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]