RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780245|ref|YP_003064658.1| 50S ribosomal protein L18 [Candidatus Liberibacter asiaticus str. psy62] (120 letters) >gnl|CDD|180156 PRK05593, rplR, 50S ribosomal protein L18; Reviewed. Length = 117 Score = 130 bits (330), Expect = 7e-32 Identities = 59/118 (50%), Positives = 77/118 (65%), Gaps = 2/118 (1%) Query: 3 TKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLR 62 KK+ RR R+R+ + S + R RLSV RS++HIY Q+IDD G TL SAS+L + +R Sbjct: 2 DKKEARLRRHRRVRKKI-SGTAERPRLSVFRSNRHIYAQVIDDVKGKTLASASTLEKDVR 60 Query: 63 SSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 + LK G N AA VG L+ ERA G+K V FDRG + Y GR+ ALADA R+ G+ F Sbjct: 61 AGLK-GGNKEAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAGLKF 117 >gnl|CDD|129170 TIGR00060, L18_bact, ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model. Length = 114 Score = 93.3 bits (232), Expect = 1e-20 Identities = 56/118 (47%), Positives = 71/118 (60%), Gaps = 5/118 (4%) Query: 4 KKKVLARRISRIRRHLKSVS-RGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLR 62 KK RR RIRR L+ R RL V RS++HIY Q+IDDS L SAS+L + Sbjct: 1 KKSARIRRHKRIRRKLRETGEANRPRLVVFRSNRHIYAQVIDDSKSEVLASASTLEK--- 57 Query: 63 SSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 LK N AA VG L+ ER + G+K V FDRG + Y GR+AALA+A R+ G++F Sbjct: 58 -KLKYTGNKDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAGLNF 114 >gnl|CDD|173330 PTZ00032, PTZ00032, 60S ribosomal protein L18; Provisional. Length = 211 Score = 61.4 bits (149), Expect = 5e-11 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 12/107 (11%) Query: 26 RLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKT------------GANIVA 73 R RL++ ++ +Y I+DD H L + + + L T G I A Sbjct: 105 RPRLTLKNTNNQMYATIVDDYTRHVLCFSCTNFKYLSHIFGTYPTKTTNRVRNNGGTIKA 164 Query: 74 ATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120 A +G L+ +A+ G+ V FDR + Y G++ ALA+ R G+ F Sbjct: 165 AYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVGLQF 211 >gnl|CDD|181476 PRK08569, rpl18p, 50S ribosomal protein L18P; Reviewed. Length = 193 Score = 34.1 bits (79), Expect = 0.010 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 14/102 (13%) Query: 16 RRHLKSVSRGRLRLSVCRSSKHIYGQIID-DSIG-HTLVSASSLNEPLRSSLKTG----- 68 R+ LK + G+ RL V +++KH+ QI+ D G TL SA S R K G Sbjct: 22 RKRLKLLLSGKPRLVVRKTNKHVIAQIVKYDPKGDRTLASAHS-----RELAKYGWKGDT 76 Query: 69 ANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYC--GRIAA 108 N AA G L ++A+K GV+ D G H R+ A Sbjct: 77 GNTPAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFA 118 >gnl|CDD|177752 PLN00148, PLN00148, potassium transporter; Provisional. Length = 785 Score = 27.1 bits (60), Expect = 1.1 Identities = 10/15 (66%), Positives = 12/15 (80%) Query: 28 RLSVCRSSKHIYGQI 42 R+ V +SKHIYGQI Sbjct: 378 RVKVVHTSKHIYGQI 392 >gnl|CDD|180009 PRK05313, PRK05313, hypothetical protein; Provisional. Length = 452 Score = 26.3 bits (59), Expect = 1.8 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 3/18 (16%) Query: 104 GRIAALA---DAVRKGGV 118 G AALA DAV+KGG Sbjct: 302 GTTAALALLNDAVKKGGA 319 >gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit alpha; Validated. Length = 764 Score = 25.9 bits (57), Expect = 2.4 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%) Query: 79 NLLVERAVKVGVKSVYFDRGKHL 101 NL +E A K GVK++Y+ R K L Sbjct: 733 NLYIE-AWKQGVKTIYYVRNKSL 754 >gnl|CDD|181604 PRK08990, PRK08990, flagellar motor protein PomA; Reviewed. Length = 254 Score = 25.8 bits (57), Expect = 2.7 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%) Query: 85 AVKVGVKSVYF--DRGKHLYCGRIAALADAVRKGG 117 AVK+ K+ F D+ + L +I +ADA RKGG Sbjct: 58 AVKIAGKAFMFKIDKPEDL-IEQIVEMADAARKGG 91 >gnl|CDD|185349 PRK15452, PRK15452, putative protease; Provisional. Length = 443 Score = 25.2 bits (56), Expect = 4.1 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%) Query: 82 VERAVKVGVKSVYFD-RGK-HLYCGRIA-----ALADAV 113 VER K+GV S+ + R K Y R A A+ DAV Sbjct: 274 VERLTKMGVHSLKIEGRTKSFYYVARTAQVYRKAIDDAV 312 >gnl|CDD|183475 PRK12364, PRK12364, ribonucleotide-diphosphate reductase subunit alpha; Provisional. Length = 842 Score = 24.7 bits (54), Expect = 5.3 Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 84 RAVKVGVKSVYFDRGKHL 101 A + GVK++Y+ R K L Sbjct: 815 LAWEEGVKTIYYVRSKSL 832 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.134 0.371 Gapped Lambda K H 0.267 0.0722 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,847,709 Number of extensions: 102276 Number of successful extensions: 229 Number of sequences better than 10.0: 1 Number of HSP's gapped: 224 Number of HSP's successfully gapped: 21 Length of query: 120 Length of database: 5,994,473 Length adjustment: 81 Effective length of query: 39 Effective length of database: 4,244,225 Effective search space: 165524775 Effective search space used: 165524775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 51 (23.4 bits)