RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780245|ref|YP_003064658.1| 50S ribosomal protein L18
[Candidatus Liberibacter asiaticus str. psy62]
(120 letters)
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 93.9 bits (233), Expect = 4e-21
Identities = 49/115 (42%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 4 KKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRS 63
KK RR +R RR L+ + G RL V R+ +HIY Q+I + LV+AS++ + +
Sbjct: 1 KKSARIRRATRARRKLQEL--GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAE 58
Query: 64 SLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGV 118
LK N AA AVG + ERA++ G+K V FDR Y GR+ ALADA R+ G+
Sbjct: 59 QLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGL 113
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus
thermophilus [TaxId: 274]}
Length = 86
Score = 92.9 bits (231), Expect = 7e-21
Identities = 49/91 (53%), Positives = 58/91 (63%), Gaps = 5/91 (5%)
Query: 26 RLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERA 85
RLRLSV RS KHIY QIIDD G TLVSASSL L+ G A VG L E+A
Sbjct: 1 RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEKA 55
Query: 86 VKVGVKSVYFDRGKHLYCGRIAALADAVRKG 116
+ +G+K V FDRG + Y GR+ ALA+ R+G
Sbjct: 56 LALGIKQVAFDRGPYKYHGRVKALAEGAREG 86
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 97
Score = 89.1 bits (221), Expect = 1e-19
Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
Query: 26 RLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERA 85
R RLSV RS+KHIY QIIDD+ T+VSAS+L++ L + NI AA VG L+ +RA
Sbjct: 5 RPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--LDSTNNIEAAKKVGELVAKRA 62
Query: 86 VKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120
++ G+K V FDRG +LY GR+ ALADA R+ G+ F
Sbjct: 63 LEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 97
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 104
Score = 86.1 bits (213), Expect = 7e-19
Identities = 56/110 (50%), Positives = 67/110 (60%), Gaps = 8/110 (7%)
Query: 10 RRISRIRRHLKSVSR--GRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKT 67
RR R RR +++ + GRLRLSV RSSKHIY QIIDDS G TL +ASS +
Sbjct: 1 RRKLRTRRKVRTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALK------S 54
Query: 68 GANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGG 117
G A AVG L A + G+K V FDRG + Y GR+ ALADA R+GG
Sbjct: 55 GNKTDTAAAVGKALAAAAAEKGIKQVVFDRGSYKYHGRVKALADAAREGG 104
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 186
Score = 81.1 bits (200), Expect = 3e-17
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 4 KKKVLARRISRIRRH--LKSVSRGRLRLSVCRSSKHIYGQII--DDSIGHTLVSASSLNE 59
K + RR +R H L+ + G+ RL +S+KH+ Q++ + TL SA S +
Sbjct: 7 KVPMRRRREARTDYHQRLRLLKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDL 66
Query: 60 PLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKH--LYCGRIAALADAVRKGG 117
N+ +A G L RA + GV+ D G + ++ A+ + G
Sbjct: 67 AEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAG 126
Query: 118 VS 119
+
Sbjct: 127 LD 128
>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 27.9 bits (60), Expect = 0.25
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 82 VERAVKVGVKSVYFDRGKHLYCGRIAALAD 111
VE A G++S+ F + RI ALAD
Sbjct: 167 VEFAQNSGIQSINFLESTYEGNHRIQALAD 196
>d1ouoa_ d.4.1.6 (A:) Periplasmic endonuclease Vvn {Vibrio
vulnificus [TaxId: 672]}
Length = 210
Score = 23.4 bits (50), Expect = 5.6
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 91 KSVYFDRGKHLYCG 104
+Y D YCG
Sbjct: 14 VKIYQDHPISFYCG 27
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 23.2 bits (48), Expect = 6.4
Identities = 5/48 (10%), Positives = 16/48 (33%)
Query: 73 AATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120
+G +V ++ +G + R + + + ++ G
Sbjct: 11 GTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKL 58
>d1xkra_ d.252.1.1 (A:) Chemotaxis protein CheC {Thermotoga maritima
[TaxId: 2336]}
Length = 205
Score = 22.9 bits (49), Expect = 7.3
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 41 QIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNL--LVERAVKVGVKSVYFDRG 98
+I++ G + +L+E S+L+ NI+ T V L + + + D
Sbjct: 87 KILEILTGRAPDNLLNLDEFSASALREIGNIMCGTYVSALADFLGFKIDTLPPQLVIDMI 146
Query: 99 KHL 101
+
Sbjct: 147 SAI 149
>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 436
Score = 22.9 bits (48), Expect = 8.4
Identities = 3/34 (8%), Positives = 10/34 (29%)
Query: 82 VERAVKVGVKSVYFDRGKHLYCGRIAALADAVRK 115
+ A + G+ R + + ++
Sbjct: 53 LAVAKETGLADSLLKRLDLFKGDKFEVMLQGIKD 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.371
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 406,260
Number of extensions: 15489
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 18
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)