HHsearch alignment for GI: 254780246 and conserved domain: CHL00140

>CHL00140 rpl6 ribosomal protein L6; Validated.
Probab=100.00  E-value=0  Score=463.56  Aligned_cols=176  Identities=51%  Similarity=0.842  Sum_probs=174.6

Q ss_pred             CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC
Q ss_conf             97444645107997589997998999906946999826863999707589985055432201338887521125897511
Q gi|254780246|r    1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT   80 (177)
Q Consensus         1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt   80 (177)
T Consensus         1 MSrIgk~pI~IP~gV~V~i~~~~v~VkGpkG~L~~~~~~~v~v~~~~~~i~v~~~~~~k~~ka~~GT~RslI~NmI~GVt   80 (178)
T CHL00140          1 MSRIGKLPIKIPENVNITIKDQVITVKGPKGTLSRTLPEGIKIEQQNNTLFVKPVEDTKKARKLHGLYRTLINNMVIGVS   80 (178)
T ss_pred             CCCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEEECCCCEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHEECC
T ss_conf             97245676027999789997999999869968999868973999849989860466417899999999999854312220


Q ss_pred             EEEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             00377787404763012204249999515676552588503899769988999957998987999874100747985787
Q gi|254780246|r   81 KGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGK  160 (177)
Q Consensus        81 ~Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK  160 (177)
T Consensus        81 ~Gf~k~LeivGvGyra~~~g~~L~l~LG~SH~i~~~iP~gI~v~~~~~t~I~i~G~DKq~Vgq~AA~Ir~~r~PEPYKGK  160 (178)
T CHL00140         81 EGFEKKLELQGVGYRAQLQGKDLILNVGYSHPVKIKPPEGISVEVENNTTIIIKGIDKELVGQFAANIRSIRPPEPYKGK  160 (178)
T ss_pred             CCEEEEEEEEEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             57289999996128987069779993568787842298987999589999999968899999999997413899895898


Q ss_pred             CEEECCEEEEEEECCC
Q ss_conf             4345370999710566
Q gi|254780246|r  161 GIRYSGEVIIRKEGKK  176 (177)
Q Consensus       161 gI~~~~e~I~~KegKk  176 (177)
T Consensus       161 GI~y~~E~i~rK~gK~  176 (178)
T CHL00140        161 GIRYKGETIRRKAGKA  176 (178)
T ss_pred             CCCCCCEEEEECCCCC
T ss_conf             9668784999547667