HHsearch alignment for GI: 254780246 and conserved domain: CHL00140
>CHL00140 rpl6 ribosomal protein L6; Validated.
Probab=100.00 E-value=0 Score=463.56 Aligned_cols=176 Identities=51% Similarity=0.842 Sum_probs=174.6
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC
Q ss_conf 97444645107997589997998999906946999826863999707589985055432201338887521125897511
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT 80 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt 80 (177)
T Consensus 1 MSrIgk~pI~IP~gV~V~i~~~~v~VkGpkG~L~~~~~~~v~v~~~~~~i~v~~~~~~k~~ka~~GT~RslI~NmI~GVt 80 (178)
T CHL00140 1 MSRIGKLPIKIPENVNITIKDQVITVKGPKGTLSRTLPEGIKIEQQNNTLFVKPVEDTKKARKLHGLYRTLINNMVIGVS 80 (178)
T ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEEECCCCEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHEECC
T ss_conf 97245676027999789997999999869968999868973999849989860466417899999999999854312220
Q ss_pred EEEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 00377787404763012204249999515676552588503899769988999957998987999874100747985787
Q gi|254780246|r 81 KGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGK 160 (177)
Q Consensus 81 ~Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK 160 (177)
T Consensus 81 ~Gf~k~LeivGvGyra~~~g~~L~l~LG~SH~i~~~iP~gI~v~~~~~t~I~i~G~DKq~Vgq~AA~Ir~~r~PEPYKGK 160 (178)
T CHL00140 81 EGFEKKLELQGVGYRAQLQGKDLILNVGYSHPVKIKPPEGISVEVENNTTIIIKGIDKELVGQFAANIRSIRPPEPYKGK 160 (178)
T ss_pred CCEEEEEEEEEEEEEEEECCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 57289999996128987069779993568787842298987999589999999968899999999997413899895898
Q ss_pred CEEECCEEEEEEECCC
Q ss_conf 4345370999710566
Q gi|254780246|r 161 GIRYSGEVIIRKEGKK 176 (177)
Q Consensus 161 gI~~~~e~I~~KegKk 176 (177)
T Consensus 161 GI~y~~E~i~rK~gK~ 176 (178)
T CHL00140 161 GIRYKGETIRRKAGKA 176 (178)
T ss_pred CCCCCCEEEEECCCCC
T ss_conf 9668784999547667