HHsearch alignment for GI: 254780246 and conserved domain: PTZ00027
>PTZ00027 60S ribosomal protein L6; Provisional.
Probab=100.00 E-value=5.6e-45 Score=281.89 Aligned_cols=166 Identities=24% Similarity=0.339 Sum_probs=149.9
Q ss_pred CCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEEE--CCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCE
Q ss_conf 4645107997589997998999906946999826-86399970--75899850554322013388875211258975110
Q gi|254780246|r 5 GKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTLQ--EGMLSVATINGSKKARAAWGMSRTMINNLFHGVTK 81 (177)
Q Consensus 5 gk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~~--~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~ 81 (177)
T Consensus 6 ~~~~I~IPegV~vti~~~~VtVkGp~G~l~r~f~h~~v~i~~~~~~~~i~v~~~~~~rk~~A~v~T~~shI~NMikGVt~ 85 (190)
T PTZ00027 6 SSQKLKIPEGVTVSVKSRKVTVKGKYGTLTRSFRHLPIDLRLSKDKKYVKVVMWFGTPSKIAAIRTVCSHIKNMMTGVTK 85 (190)
T ss_pred ECEEEECCCCCEEEEECCEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCHHEEEHHHHHHHHHHHHHHCCC
T ss_conf 12189789997999978899999189479999405847999947998999999569700224425299999878853237
Q ss_pred EEEEEEEEE--CCCCEEEE--CCCEEE--EEECCCCCCCCCCCCEEEEEECC--CCEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 037778740--47630122--042499--99515676552588503899769--98899995799898799987410074
Q gi|254780246|r 82 GYERKLEIS--GVGCRAFM--DGRNLK--MSLGFSHDVLYTPLEGISIFVSK--PTEIIVSGIDKQKVGHVAAEIRSYRS 153 (177)
Q Consensus 82 Gf~~~L~lv--gvgy~v~~--~g~~l~--l~LG~sh~i~~~ip~~v~v~~~k--~~~I~i~G~dke~Vgq~AA~Ir~~r~ 153 (177)
T Consensus 86 Gf~Ykmk~vyaHFPi~v~v~~~g~~veI~NFLGEK~~R~~~i~~gv~v~~~~~~kdeiiv~G~d~E~V~qtAA~Ieqat~ 165 (190)
T PTZ00027 86 KFQYKMRLVHAHFPINSNIVDNGKVIEIRNFLGEKRVRVVKVLPGVVVEKSESVKDELILTGVDVENVSRSAALIHQSAL 165 (190)
T ss_pred CCEEEEEEEEEECCCEEEEECCCCEEEEECCCCCCCCEEEECCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 80999999999878789992599599998234773045998889919998777685899982889997787988776410
Q ss_pred CCCCCCCC--EEECCEEEEEEE
Q ss_conf 79857874--345370999710
Q gi|254780246|r 154 AEPYKGKG--IRYSGEVIIRKE 173 (177)
Q Consensus 154 pepYKGKg--I~~~~e~I~~Ke 173 (177)
T Consensus 166 v---k~kD~RvF~DGIYv~eKg 184 (190)
T PTZ00027 166 V---RNKDIRKFLDGIYVSEKG 184 (190)
T ss_pred C---CCCCCCEEECCEEEEEEE
T ss_conf 6---799752810566999743