HHsearch alignment of GI: 254780246 and MMDB domain: 1nkw_E_110-212

>1nkw_E (E:110-212) 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans}
Probab=100.00  E-value=8.6e-39  Score=245.26  Aligned_cols=95  Identities=48%  Similarity=0.822  Sum_probs=93.5

Q ss_pred             EEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf             37778740476301220424999951567655258850389976998899995799898799987410074798578743
Q gi|254780246|r   83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGI  162 (177)
Q Consensus        83 f~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKgI  162 (177)
                      |++.|+++|+||||+++++.|.|+|||||++.+.||++++++|+++|.|+|+|+|||.|+||||+||++|+|||||||||
T Consensus         1 f~k~LelvGVGYra~~~~~~L~l~LG~SH~i~~~iP~~I~v~~~~~t~i~i~G~dKq~vg~faa~Ir~~r~pepYKGKGI   80 (103)
T 1nkw_E            1 YTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGV   80 (103)
T ss_pred             EEEEEEEEEEEEEEEECCCCCEEEECCCCCEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             18999997657745861664236631235435768977679854898999997899999999999851489989789870


Q ss_pred             EECCEEEEEEECCCC
Q ss_conf             453709997105669
Q gi|254780246|r  163 RYSGEVIIRKEGKKK  177 (177)
Q Consensus       163 ~~~~e~I~~KegKkK  177 (177)
                      ||.||+|.|||||++
T Consensus        81 ~y~~E~I~~KeGKk~   95 (103)
T 1nkw_E           81 RFVGEQIALKAGKAG   95 (103)
T ss_pred             CCCCEEEEEECCCCC
T ss_conf             698889997065335