HHsearch alignment of GI: 254780246 and MMDB domain: 1vq8_E_1-79
>1vq8_E (E:1-79) 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=99.88 E-value=1.6e-23 Score=156.41 Aligned_cols=78 Identities=26% Similarity=0.485 Sum_probs=75.5
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEEC
Q ss_conf 97444645107997589997998999906946999826-86399970758998505543220133888752112589751
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGV 79 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GV 79 (177)
||||. |.||++|+++++++.++|+||+|+|++.|+ ..+.++.+++.+.+.+++++++++|+|||+||||+|||+||
T Consensus 1 MSrip---I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~GT~rslI~NmI~GV 77 (79)
T 1vq8_E 1 MPRVE---LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGV 77 (79)
T ss_dssp -CEEE---EECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC---EECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98665---618999789997999999848989999914885799983988998427664236789999999887788873
Q ss_pred CE
Q ss_conf 10
Q gi|254780246|r 80 TK 81 (177)
Q Consensus 80 t~ 81 (177)
|+
T Consensus 78 tk 79 (79)
T 1vq8_E 78 TE 79 (79)
T ss_dssp HT
T ss_pred CC
T ss_conf 00