HHsearch alignment of GI: 254780246 and MMDB domain: 2cql_A_

>2cql_A (A:) OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94  E-value=1.2e-27  Score=180.44  Aligned_cols=86  Identities=24%  Similarity=0.348  Sum_probs=80.5

Q ss_pred             CCCCC-CCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCC----EEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEE
Q ss_conf             97444-64510799758999799899990694699982686----39997075899850554322013388875211258
Q gi|254780246|r    1 MSRIG-KKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDG----ISVTLQEGMLSVATINGSKKARAAWGMSRTMINNL   75 (177)
Q Consensus         1 MSrIg-k~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~----v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nm   75 (177)
                      ||||| ++||.||++|+|+++++.++|+||+|+|+++|++.    +.++.+++.+.+.++.++++++|||||+||||+||
T Consensus         8 MsrIg~k~pI~IP~gV~V~i~~~~itVkGp~G~ls~~~~~~~~~~v~~~~~~~~i~~~~~~~~kk~~a~~GT~rsli~Nm   87 (100)
T 2cql_A            8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNM   87 (100)
T ss_dssp             CCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSSSCEEEEECCSSSTHHHHHHHHHHHHHHHH
T ss_pred             CCEECCCCCEECCCCCEEEEECCEEEEEECCCEEEEEECCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf             56461699586799979999699999992893699982368704899714656899951787588999989899999865


Q ss_pred             EEECCEEEEEE
Q ss_conf             97511003777
Q gi|254780246|r   76 FHGVTKGYERK   86 (177)
Q Consensus        76 i~GVt~Gf~~~   86 (177)
                      |+||++||+|.
T Consensus        88 I~GVt~Gf~kt   98 (100)
T 2cql_A           88 IKGVTLGSGPS   98 (100)
T ss_dssp             HHHHHTSCCSC
T ss_pred             EEEEECCEECC
T ss_conf             25322745068