Query gi|254780246|ref|YP_003064659.1| 50S ribosomal protein L6 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 177 No_of_seqs 130 out of 2146 Neff 6.6 Searched_HMMs 33803 Date Tue May 24 02:57:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780246.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1rl6_A Protein (ribosomal pro 100.0 1.7E-39 5E-44 249.3 9.2 96 82-177 1-96 (97) 2 >1nkw_E 50S ribosomal protein 100.0 8.6E-39 2.5E-43 245.3 10.1 95 83-177 1-95 (103) 3 >3i1n_G 50S ribosomal protein 100.0 2.5E-39 7.4E-44 248.3 5.8 96 82-177 1-96 (96) 4 >2zjr_E 50S ribosomal protein 100.0 8.6E-39 2.5E-43 245.3 6.4 95 83-177 1-95 (103) 5 >2j01_H 50S ribosomal protein 100.0 1.1E-37 3.3E-42 238.7 5.1 95 82-176 1-95 (99) 6 >3bbo_I Ribosomal protein L6; 100.0 4.6E-37 1.4E-41 235.2 6.6 96 81-176 1-96 (100) 7 >1nkw_E 50S ribosomal protein 99.9 4.2E-28 1.2E-32 183.1 8.7 82 1-82 28-109 (109) 8 >2cql_A OK/SW-CL.103, 60S ribo 99.9 1.2E-27 3.6E-32 180.4 4.1 86 1-86 8-98 (100) 9 >3i1n_G 50S ribosomal protein 99.9 1.2E-27 3.4E-32 180.5 0.9 81 1-81 1-81 (81) 10 >2zjr_E 50S ribosomal protein 99.9 1.2E-28 3.6E-33 186.2 -4.4 82 1-82 1-82 (82) 11 >2j01_H 50S ribosomal protein 99.9 6.3E-28 1.9E-32 182.1 -1.9 81 1-81 1-81 (81) 12 >1rl6_A Protein (ribosomal pro 99.9 2.7E-26 8E-31 172.6 4.8 80 2-81 1-80 (80) 13 >3bbo_I Ribosomal protein L6; 99.9 2.2E-26 6.6E-31 173.1 4.2 80 1-80 43-123 (123) 14 >2zkr_e 60S ribosomal protein 99.9 1.5E-25 4.3E-30 168.3 3.3 81 1-81 1-86 (86) 15 >1vq8_E 50S ribosomal protein 99.9 1.6E-23 4.8E-28 156.4 4.7 78 1-81 1-79 (79) 16 >3jyw_H 60S ribosomal protein 99.8 4.3E-22 1.3E-26 148.2 2.9 77 5-81 1-79 (79) 17 >1vq8_E 50S ribosomal protein 99.8 1.2E-19 3.6E-24 133.9 10.1 90 82-175 1-96 (99) 18 >2zkr_e 60S ribosomal protein 99.8 8.2E-19 2.4E-23 129.1 10.4 89 82-173 1-99 (106) 19 >3jyw_H 60S ribosomal protein 99.7 8.8E-19 2.6E-23 128.9 5.2 88 82-172 1-100 (100) 20 >3kd4_A Putative protease; str 63.5 8.1 0.00024 18.6 3.5 26 9-34 65-90 (140) 21 >3igf_A ALL4481 protein; two-d 45.9 21 0.00061 16.3 6.7 48 12-59 21-74 (77) 22 >2wj7_A Alpha-crystallin B cha 43.1 16 0.00048 16.9 2.3 18 12-29 2-19 (44) 23 >3d1g_A DNA polymerase III sub 37.8 28 0.00082 15.5 4.4 48 5-54 23-72 (178) 24 >3eat_X Pyoverdine biosynthesi 36.4 25 0.00075 15.7 2.4 44 108-151 46-89 (93) 25 >2jug_A TUBC protein; docking 28.2 31 0.00093 15.2 1.8 23 13-35 17-39 (78) 26 >2z0s_A Probable exosome compl 25.9 44 0.0013 14.4 4.4 42 119-160 30-71 (88) 27 >2je6_I RRP4, exosome complex 25.8 19 0.00057 16.5 0.3 45 118-162 28-72 (96) 28 >2bol_A TSP36, small heat shoc 25.0 46 0.0014 14.3 7.5 44 12-55 31-92 (96) 29 >3hhd_A Fatty acid synthase; t 22.3 52 0.0015 13.9 3.6 38 113-151 16-54 (78) No 1 >>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} (A:81-177) Probab=100.00 E-value=1.7e-39 Score=249.31 Aligned_cols=96 Identities=55% Similarity=0.893 Sum_probs=95.0 Q ss_pred EEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 03777874047630122042499995156765525885038997699889999579989879998741007479857874 Q gi|254780246|r 82 GYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKG 161 (177) Q Consensus 82 Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKg 161 (177) ||+++|+++|+||||+++++.|.|+|||||++.+.||++++++|++||.|+|+|+|||.|+||||+||++|+|||||||| T Consensus 1 Gf~~~LelvGvGYra~~~~~~L~l~LG~SH~i~~~iP~~i~v~~~k~t~i~i~g~dKq~vg~fAa~Ir~~R~pepYKGKG 80 (97) T 1rl6_A 1 GYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKG 80 (97) T ss_dssp CEEEEEEEESTTCEEEEETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCCE T ss_pred CCEEEEEEECCCCEEECCCCEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 50789998516522560497999971655453235899779995478500685168999999999987307998845998 Q ss_pred EEECCEEEEEEECCCC Q ss_conf 3453709997105669 Q gi|254780246|r 162 IRYSGEVIIRKEGKKK 177 (177) Q Consensus 162 I~~~~e~I~~KegKkK 177 (177) |||+||+|.||||||+ T Consensus 81 I~y~~E~i~~K~gKk~ 96 (97) T 1rl6_A 81 IRYEGELVRLKEGKTG 96 (97) T ss_dssp EEETTCCCCC------ T ss_pred CCCCCEEEEECCCCCC T ss_conf 6687869997375578 No 2 >>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} (E:110-212) Probab=100.00 E-value=8.6e-39 Score=245.26 Aligned_cols=95 Identities=48% Similarity=0.822 Sum_probs=93.5 Q ss_pred EEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE Q ss_conf 37778740476301220424999951567655258850389976998899995799898799987410074798578743 Q gi|254780246|r 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGI 162 (177) Q Consensus 83 f~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKgI 162 (177) |++.|+++|+||||+++++.|.|+|||||++.+.||++++++|+++|.|+|+|+|||.|+||||+||++|+||||||||| T Consensus 1 f~k~LelvGVGYra~~~~~~L~l~LG~SH~i~~~iP~~I~v~~~~~t~i~i~G~dKq~vg~faa~Ir~~r~pepYKGKGI 80 (103) T 1nkw_E 1 YTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGV 80 (103) T ss_pred EEEEEEEEEEEEEEEECCCCCEEEECCCCCEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 18999997657745861664236631235435768977679854898999997899999999999851489989789870 Q ss_pred EECCEEEEEEECCCC Q ss_conf 453709997105669 Q gi|254780246|r 163 RYSGEVIIRKEGKKK 177 (177) Q Consensus 163 ~~~~e~I~~KegKkK 177 (177) ||.||+|.|||||++ T Consensus 81 ~y~~E~I~~KeGKk~ 95 (103) T 1nkw_E 81 RFVGEQIALKAGKAG 95 (103) T ss_pred CCCCEEEEEECCCCC T ss_conf 698889997065335 No 3 >>3i1n_G 50S ribosomal protein L6; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_G 3e1b_3 3e1d_3 1vs6_G 3i1p_G 3i1r_G 3i1t_G 3i20_G 3i22_G 2qam_G* 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* ... (G:82-177) Probab=100.00 E-value=2.5e-39 Score=248.34 Aligned_cols=96 Identities=50% Similarity=0.831 Sum_probs=95.3 Q ss_pred EEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 03777874047630122042499995156765525885038997699889999579989879998741007479857874 Q gi|254780246|r 82 GYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKG 161 (177) Q Consensus 82 Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKg 161 (177) ||...|+++|+||||+++|+.|.|+|||||++.+.||++++++++++|.|+++|+|||.|+||||+||++|+|||||||| T Consensus 1 Gf~~~L~l~GvGYra~~~g~~L~l~lG~SH~i~~~iP~~i~v~~~~~t~i~i~g~dKq~v~~fAa~Ir~~R~pepYKGKG 80 (96) T 3i1n_G 1 GFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKG 80 (96) T ss_dssp CBCCCEEEESTTCCBCCCSSCBCBCCSSSSCCCBCCCSSCEEECSSSSEEEEEBSCHHHHHHHHHHHHHTTCCCTTTCCE T ss_pred CEEEEEEEEECCEEEEECCCCCEEEEEECCCCCEECCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 82899998615366674043425898503342023687871355156353899748999999999985268998968988 Q ss_pred EEECCEEEEEEECCCC Q ss_conf 3453709997105669 Q gi|254780246|r 162 IRYSGEVIIRKEGKKK 177 (177) Q Consensus 162 I~~~~e~I~~KegKkK 177 (177) |+|+||+|.+|||||| T Consensus 81 I~y~~E~I~~K~gKkK 96 (96) T 3i1n_G 81 VRYADEVVRTKEAKKK 96 (96) T ss_dssp ECCSSCCCCCCCCCCC T ss_pred CCCCCEEEEECCCCCC T ss_conf 7698879993165689 No 4 >>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (E:83-185) Probab=100.00 E-value=8.6e-39 Score=245.26 Aligned_cols=95 Identities=48% Similarity=0.822 Sum_probs=93.6 Q ss_pred EEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE Q ss_conf 37778740476301220424999951567655258850389976998899995799898799987410074798578743 Q gi|254780246|r 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGI 162 (177) Q Consensus 83 f~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKgI 162 (177) |++.|+++|+||||+++++.|.|+|||||++.+.||++++++|+++|.|+|+|+|||.|+||||+||++|+||||||||| T Consensus 1 f~k~LelvGVGYra~~~~~~L~l~LG~SH~i~~~iP~~I~v~~~~~t~i~i~G~dKq~vg~faa~Ir~~r~pepYKGKGI 80 (103) T 2zjr_E 1 YTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGV 80 (103) T ss_dssp EEEEEECBSTTCCCCCBTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCCBC T ss_pred CEEEEEECCCEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 23466750230678970641047787421322317866067514675799996689999999999851589989789872 Q ss_pred EECCEEEEEEECCCC Q ss_conf 453709997105669 Q gi|254780246|r 163 RYSGEVIIRKEGKKK 177 (177) Q Consensus 163 ~~~~e~I~~KegKkK 177 (177) ||.||+|.|||||++ T Consensus 81 ~y~~E~I~~KeGKk~ 95 (103) T 2zjr_E 81 RFVGEQIALKAGKAG 95 (103) T ss_dssp CCSSCCCCCCCCC-- T ss_pred CCCCEEEEEECCCCC T ss_conf 698889997075335 No 5 >>2j01_H 50S ribosomal protein L6; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (H:82-180) Probab=100.00 E-value=1.1e-37 Score=238.74 Aligned_cols=95 Identities=52% Similarity=0.833 Sum_probs=94.0 Q ss_pred EEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 03777874047630122042499995156765525885038997699889999579989879998741007479857874 Q gi|254780246|r 82 GYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKG 161 (177) Q Consensus 82 Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKg 161 (177) ||+++|+++|+||||+++|+.|.|+|||||++.+.||++|+++++++|+|+|+|+|+|.|+||||+||++|+|||||||| T Consensus 1 Gf~~~L~lvGvGy~~~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~~~~~i~l~G~dk~~V~~~Aa~Ir~~r~pe~YKgkG 80 (99) T 2j01_H 1 GYSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEKG 80 (99) T ss_dssp CCCCEECCCSSSCEECCBTTBEEEECSSSSCEEECCCTTEEEECSSSSCEEEEESCSTTTTHHHHHHHTTSCSCSSSSSS T ss_pred CEEEEEEECCCCEEEECCCCHHEEEHHCCCCCCCCCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 82799985145311210441100001035555456999616731566356771378999999999987517999958998 Q ss_pred EEECCEEEEEEECCC Q ss_conf 345370999710566 Q gi|254780246|r 162 IRYSGEVIIRKEGKK 176 (177) Q Consensus 162 I~~~~e~I~~KegKk 176 (177) |||+||+|.+||||| T Consensus 81 I~~~ge~I~~K~gKk 95 (99) T 2j01_H 81 IYYAGEPVRLKPGKA 95 (99) T ss_dssp CCCSSCCCC------ T ss_pred EEECCEEEEEECCCC T ss_conf 788784999706655 No 6 >>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (I:124-223) Probab=100.00 E-value=4.6e-37 Score=235.21 Aligned_cols=96 Identities=49% Similarity=0.850 Sum_probs=94.8 Q ss_pred EEEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 00377787404763012204249999515676552588503899769988999957998987999874100747985787 Q gi|254780246|r 81 KGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGK 160 (177) Q Consensus 81 ~Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK 160 (177) +||+++|+++|+||||+++|+.|.|+|||||++.++||++|+++++++|+|+|+|+|+|.|+||||+||++|+||||||| T Consensus 1 kGf~~~L~lvGvgf~~~~~g~~L~l~LG~sh~i~~~ip~~v~v~~~~~~~i~l~G~dk~~V~~~Aa~I~~~r~~~~YKgk 80 (100) T 3bbo_I 1 KGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGK 80 (100) T ss_dssp TCEEECEECCSTTCCEEECSSEEEECSSCSSCEEEECCSSEEEECSSTTBCEEEESSSHHHHHHHHHTTSSSCCCTTTCC T ss_pred CCEEEEEEEEECCCCEEEECCEEEEEEECCCCCEECCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 14499999830343127604214787640234211179863687457867999975799999999998607899896887 Q ss_pred CEEECCEEEEEEECCC Q ss_conf 4345370999710566 Q gi|254780246|r 161 GIRYSGEVIIRKEGKK 176 (177) Q Consensus 161 gI~~~~e~I~~KegKk 176 (177) |||||||||.+||||| T Consensus 81 Gi~~~ge~I~~K~gKk 96 (100) T 3bbo_I 81 GVKYSDEIVRRKEGKA 96 (100) T ss_dssp SCEETTCCCCCCCCCC T ss_pred CEEECCEEEEEECCCC T ss_conf 5648886999845765 No 7 >>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} (E:1-109) Probab=99.95 E-value=4.2e-28 Score=183.11 Aligned_cols=82 Identities=41% Similarity=0.650 Sum_probs=81.4 Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC Q ss_conf 97444645107997589997998999906946999826863999707589985055432201338887521125897511 Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT 80 (177) Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt 80 (177) ||||||+||.||++|+|+++++.++|+||+|+|++++++++.++++++.+.+.+++++++++|+|||+||||+|||+||| T Consensus 28 MSrIgk~pI~IP~~V~v~i~~~~i~VkGp~G~L~~~l~~~v~i~~~~~~i~v~~~~~~kk~~a~~GT~rslI~NmI~GVt 107 (109) T 1nkw_E 28 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVS 107 (109) T ss_pred CCHHCCCCCCCCCCCEEEEECCEEEEECCCEEEEEECCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEE T ss_conf 16304676106999789997999999828844999848872787268789995165215566766669987526699980 Q ss_pred EE Q ss_conf 00 Q gi|254780246|r 81 KG 82 (177) Q Consensus 81 ~G 82 (177) +| T Consensus 108 ~G 109 (109) T 1nkw_E 108 DG 109 (109) T ss_pred CC T ss_conf 58 No 8 >>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=99.94 E-value=1.2e-27 Score=180.44 Aligned_cols=86 Identities=24% Similarity=0.348 Sum_probs=80.5 Q ss_pred CCCCC-CCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCC----EEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEE Q ss_conf 97444-64510799758999799899990694699982686----39997075899850554322013388875211258 Q gi|254780246|r 1 MSRIG-KKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDG----ISVTLQEGMLSVATINGSKKARAAWGMSRTMINNL 75 (177) Q Consensus 1 MSrIg-k~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~----v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nm 75 (177) ||||| ++||.||++|+|+++++.++|+||+|+|+++|++. +.++.+++.+.+.++.++++++|||||+||||+|| T Consensus 8 MsrIg~k~pI~IP~gV~V~i~~~~itVkGp~G~ls~~~~~~~~~~v~~~~~~~~i~~~~~~~~kk~~a~~GT~rsli~Nm 87 (100) T 2cql_A 8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNM 87 (100) T ss_dssp CCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSSSCEEEEECCSSSTHHHHHHHHHHHHHHHH T ss_pred CCEECCCCCEECCCCCEEEEECCEEEEEECCCEEEEEECCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHH T ss_conf 56461699586799979999699999992893699982368704899714656899951787588999989899999865 Q ss_pred EEECCEEEEEE Q ss_conf 97511003777 Q gi|254780246|r 76 FHGVTKGYERK 86 (177) Q Consensus 76 i~GVt~Gf~~~ 86 (177) |+||++||+|. T Consensus 88 I~GVt~Gf~kt 98 (100) T 2cql_A 88 IKGVTLGSGPS 98 (100) T ss_dssp HHHHHTSCCSC T ss_pred EEEEECCEECC T ss_conf 25322745068 No 9 >>3i1n_G 50S ribosomal protein L6; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_G 3e1b_3 3e1d_3 1vs6_G 3i1p_G 3i1r_G 3i1t_G 3i20_G 3i22_G 2qam_G* 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* ... (G:1-81) Probab=99.93 E-value=1.2e-27 Score=180.53 Aligned_cols=81 Identities=32% Similarity=0.573 Sum_probs=80.2 Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC Q ss_conf 97444645107997589997998999906946999826863999707589985055432201338887521125897511 Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT 80 (177) Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt 80 (177) ||||||+||+||+||+++++++.++|+||+|+|+++|++.+.+..+++.+.+.+++++++++|+|||+||||+|||+||| T Consensus 1 MSrIgk~pI~IP~gV~v~i~~~~i~vkGp~G~l~~~~~~~i~~~~~~~~i~v~~~~~~kk~~a~~GT~rsli~Nmi~GVt 80 (81) T 3i1n_G 1 MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVT 80 (81) T ss_dssp -CCSTTSCCCCCTTCCCEEETTEEECCCSSSCCCEEECSSCEEECCTTSCEEECCTTCSSTTHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCEECCCCCEEEEECCEEEEECCCEEEEEEEECCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 97245786206999899997999999919988999983436899658689998236442167999999999999888744 Q ss_pred E Q ss_conf 0 Q gi|254780246|r 81 K 81 (177) Q Consensus 81 ~ 81 (177) + T Consensus 81 e 81 (81) T 3i1n_G 81 E 81 (81) T ss_dssp T T ss_pred C T ss_conf 6 No 10 >>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (E:1-82) Probab=99.93 E-value=1.2e-28 Score=186.21 Aligned_cols=82 Identities=41% Similarity=0.650 Sum_probs=81.3 Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC Q ss_conf 97444645107997589997998999906946999826863999707589985055432201338887521125897511 Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT 80 (177) Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt 80 (177) ||||||+||.||++|+|+++++.++|+||+|+|++.|++++.+.++++.+.+.+++++++++|+|||+||||+|||+||| T Consensus 1 MSrIgk~pI~IP~gV~v~i~~~~i~vkGp~G~l~~~~~~~i~i~~~~~~i~v~~~~~~kk~~a~~GT~rsli~Nmi~GVt 80 (82) T 2zjr_E 1 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVS 80 (82) T ss_dssp ----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCSSSCCBCCSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCEECCCCCEEEEECCEEEEEECCEEEEEECCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 97135676206999789997899999938834998669764785057621589702100134453358887543466640 Q ss_pred EE Q ss_conf 00 Q gi|254780246|r 81 KG 82 (177) Q Consensus 81 ~G 82 (177) +| T Consensus 81 ~G 82 (82) T 2zjr_E 81 DG 82 (82) T ss_dssp HC T ss_pred CC T ss_conf 13 No 11 >>2j01_H 50S ribosomal protein L6; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (H:1-81) Probab=99.93 E-value=6.3e-28 Score=182.07 Aligned_cols=81 Identities=40% Similarity=0.680 Sum_probs=80.1 Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC Q ss_conf 97444645107997589997998999906946999826863999707589985055432201338887521125897511 Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT 80 (177) Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt 80 (177) ||||||+||.||++|+++++++.++|+||+|+|++.|++.+.+.++++.+.+.+++++++++|||||+||||+|||+||| T Consensus 1 MSrIgk~pI~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~~~~~~~~i~v~~~~~~kk~~a~~GT~rsli~Nmi~GVt 80 (81) T 2j01_H 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVS 80 (81) T ss_dssp -----------CTTCEEEECSSCEEEECSSCCEECCCCSSSCCCCCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 97245787106999889997999999839988999953454321035215898415404678999999999998878750 Q ss_pred E Q ss_conf 0 Q gi|254780246|r 81 K 81 (177) Q Consensus 81 ~ 81 (177) + T Consensus 81 e 81 (81) T 2j01_H 81 E 81 (81) T ss_dssp T T ss_pred C T ss_conf 7 No 12 >>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} (A:1-80) Probab=99.92 E-value=2.7e-26 Score=172.58 Aligned_cols=80 Identities=36% Similarity=0.691 Sum_probs=79.1 Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCE Q ss_conf 74446451079975899979989999069469998268639997075899850554322013388875211258975110 Q gi|254780246|r 2 SRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTK 81 (177) Q Consensus 2 SrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~ 81 (177) |||||+||.||++|+|+++++.++|+||+|+|+++|++.+.++++++.+.+.+++++++++|||||+||||+|||+|||+ T Consensus 1 SrIgk~pI~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~~~~~~~~i~i~~~~~~kk~~a~~GT~rsli~NmI~GVTe 80 (80) T 1rl6_A 1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK 80 (80) T ss_dssp ------CEECCTTCEEEEETTEEEEEETTEEEEEECCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEECCEEEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 96566670159998899979999999498689886447420011685899984276135667677899998777876314 No 13 >>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (I:1-123) Probab=99.92 E-value=2.2e-26 Score=173.06 Aligned_cols=80 Identities=38% Similarity=0.647 Sum_probs=76.8 Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEEC-CEEEEEECCCCCCCHHHHHHHHHEEEEEEEEC Q ss_conf 97444645107997589997998999906946999826863999707-58998505543220133888752112589751 Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQE-GMLSVATINGSKKARAAWGMSRTMINNLFHGV 79 (177) Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~-~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GV 79 (177) ||||||+||+||++|+|+++++.++|+||+|+|++.+++++.+..+| +.+.+..+++++++++||||+||||+|||+|| T Consensus 43 MSrIgk~pI~IP~~V~V~i~~~~itVkGp~G~Ls~~~~~~v~~~~~e~~~i~v~~~~~~kk~~a~~GT~rslI~NmI~GV 122 (123) T 3bbo_I 43 ESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGV 122 (123) T ss_dssp CCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEEECCSSCEEEECSSSCEEEECSSCCTTHHHHHHHHTTTTTHHHHHT T ss_pred CCHHCCCCEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 00437776007999889997999999867989999957873178732634887133220068999999999998888874 Q ss_pred C Q ss_conf 1 Q gi|254780246|r 80 T 80 (177) Q Consensus 80 t 80 (177) | T Consensus 123 T 123 (123) T 3bbo_I 123 S 123 (123) T ss_dssp T T ss_pred C T ss_conf 0 No 14 >>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (e:1-86) Probab=99.91 E-value=1.5e-25 Score=168.31 Aligned_cols=81 Identities=25% Similarity=0.356 Sum_probs=76.1 Q ss_pred CCCCC-CCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCC----EEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEE Q ss_conf 97444-64510799758999799899990694699982686----39997075899850554322013388875211258 Q gi|254780246|r 1 MSRIG-KKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDG----ISVTLQEGMLSVATINGSKKARAAWGMSRTMINNL 75 (177) Q Consensus 1 MSrIg-k~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~----v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nm 75 (177) ||||| ++||.||++|+++++++.++|+||+|+|+++|++. +.++.+++.+.+.++.++++++|+|||+||||+|| T Consensus 1 MsrIg~k~pI~IP~~V~v~i~~~~i~VkGp~G~l~~~~~~~~~~~i~~~~~~~~i~~~~~~~~k~~~a~~GT~rsli~Nm 80 (86) T 2zkr_e 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNM 80 (86) T ss_dssp ---------CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEETTTTCEEEEECSCCCHHHHHHHHHHHHHHHHH T ss_pred CCEEECCCCEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCE T ss_conf 96220588587799989999899999994994999997268689999616577799942775165665788899876405 Q ss_pred EEECCE Q ss_conf 975110 Q gi|254780246|r 76 FHGVTK 81 (177) Q Consensus 76 i~GVt~ 81 (177) |+|||. T Consensus 81 i~GVT~ 86 (86) T 2zkr_e 81 IKGVTL 86 (86) T ss_dssp HHHHHT T ss_pred EEEEEE T ss_conf 541101 No 15 >>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (E:1-79) Probab=99.88 E-value=1.6e-23 Score=156.41 Aligned_cols=78 Identities=26% Similarity=0.485 Sum_probs=75.5 Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEEC Q ss_conf 97444645107997589997998999906946999826-86399970758998505543220133888752112589751 Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGV 79 (177) Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GV 79 (177) ||||. |.||++|+++++++.++|+||+|+|++.|+ ..+.++.+++.+.+.+++++++++|+|||+||||+|||+|| T Consensus 1 MSrip---I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~GT~rslI~NmI~GV 77 (79) T 1vq8_E 1 MPRVE---LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGV 77 (79) T ss_dssp -CEEE---EECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCC---EECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 98665---618999789997999999848989999914885799983988998427664236789999999887788873 Q ss_pred CE Q ss_conf 10 Q gi|254780246|r 80 TK 81 (177) Q Consensus 80 t~ 81 (177) |+ T Consensus 78 tk 79 (79) T 1vq8_E 78 TE 79 (79) T ss_dssp HT T ss_pred CC T ss_conf 00 No 16 >>3jyw_H 60S ribosomal protein L9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_H (H:1-79) Probab=99.84 E-value=4.3e-22 Score=148.15 Aligned_cols=77 Identities=31% Similarity=0.534 Sum_probs=71.7 Q ss_pred CCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECC--CEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCE Q ss_conf 46451079975899979989999069469998268--639997075899850554322013388875211258975110 Q gi|254780246|r 5 GKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSD--GISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTK 81 (177) Q Consensus 5 gk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~--~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~ 81 (177) .|+||.||++|+|+++++.++|+||+|+|++.|++ .+.+..+++.+.+.+++++++++|||||+||||+|||+|||+ T Consensus 1 sk~pI~IP~~V~v~i~~~~i~vkGp~G~ls~~~~~~~~~~~~~~~~~i~v~~~~~~kk~~a~~GT~rslI~Nmi~GVTe 79 (79) T 3jyw_H 1 TEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTK 79 (79) T ss_dssp CEEEECCCTTCEEEEETTEEEEECSSCEEEEECCCSSCBCCCEETTEEEEECSCCCHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHEEEEEEC T ss_conf 9960377999899997999999868989999945885789993898799970787577898899999987412340123 No 17 >>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (E:80-178) Probab=99.81 E-value=1.2e-19 Score=133.88 Aligned_cols=90 Identities=24% Similarity=0.312 Sum_probs=82.6 Q ss_pred EEEEEEEEE--CCCCEEEECCCEEEE--EECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCC Q ss_conf 037778740--476301220424999--9515676552588503899769988999957998987999874100747985 Q gi|254780246|r 82 GYERKLEIS--GVGCRAFMDGRNLKM--SLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPY 157 (177) Q Consensus 82 Gf~~~L~lv--gvgy~v~~~g~~l~l--~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepY 157 (177) ||+|+|+++ |||+.+.++|+.+++ +||+..++.+.+++||++++.+ ++|+|+|+|+|.|+|+||+|++.++. T Consensus 1 Gf~Ykmk~vYaHFPi~v~v~g~~v~I~NFlGEK~~R~~~i~~gv~v~~~k-deiii~G~d~E~VsqtAA~I~qat~v--- 76 (99) T 1vq8_E 1 GWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDG-EELTVSGPDIEAVGQTAADIEQLTRI--- 76 (99) T ss_dssp CEEEEEEEECSSSCCEEEEETTEEEEESGGGCSSCEEEECCTTCEEEEET-TEEEEEESCHHHHHHHHHHHHHTTCC--- T ss_pred CEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCEEEECCCCCEEEECC-CEEEEEECCHHHHHHHHHHHHCCCCC--- T ss_conf 34899999988740046427871456012564032466668985356647-65999958999998999997447999--- Q ss_pred CCCCE--EECCEEEEEEECC Q ss_conf 78743--4537099971056 Q gi|254780246|r 158 KGKGI--RYSGEVIIRKEGK 175 (177) Q Consensus 158 KGKgI--~~~~e~I~~KegK 175 (177) |+||+ |+||+||..|... T Consensus 77 k~kD~R~FlDGIYv~eK~~i 96 (99) T 1vq8_E 77 NDKDVRVFQDGVYITRKPNR 96 (99) T ss_dssp SSSCTTTCCCEEEEEECC-- T ss_pred CCCCCEEEECCEEEEECCCC T ss_conf 99971184378899986887 No 18 >>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (e:87-192) Probab=99.79 E-value=8.2e-19 Score=129.09 Aligned_cols=89 Identities=24% Similarity=0.256 Sum_probs=79.4 Q ss_pred EEEEEEEEE--CCCCEEEEC--CCEEEE--EECCCCCCCCCCCCEEEEEEC--CCCEEEEEECCHHHHHHHHHHHHCCCC Q ss_conf 037778740--476301220--424999--951567655258850389976--998899995799898799987410074 Q gi|254780246|r 82 GYERKLEIS--GVGCRAFMD--GRNLKM--SLGFSHDVLYTPLEGISIFVS--KPTEIIVSGIDKQKVGHVAAEIRSYRS 153 (177) Q Consensus 82 Gf~~~L~lv--gvgy~v~~~--g~~l~l--~LG~sh~i~~~ip~~v~v~~~--k~~~I~i~G~dke~Vgq~AA~Ir~~r~ 153 (177) ||+|+|+++ |||+.+.++ |+.+.+ +||+..++.+.+++||+++.. .+++|+|+|+|+|.|||+||+|++.++ T Consensus 1 Gf~Ykmk~vYaHFPi~v~v~~~g~~veI~NFlGEK~~R~~~i~~gv~v~~~~~~kdeiii~G~d~E~VsqtAA~I~qat~ 80 (106) T 2zkr_e 1 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATT 80 (106) T ss_dssp CEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHHHHHHHHHHHHTC T ss_pred EEEEEEEEEEECCHHHEEECCCCCEEEEEEEEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHCCCCCC T ss_conf 18999999885460627751688379998886202621002579820577606896799995689999799986489975 Q ss_pred CCCCCCCCE--EECCEEEEEEE Q ss_conf 798578743--45370999710 Q gi|254780246|r 154 AEPYKGKGI--RYSGEVIIRKE 173 (177) Q Consensus 154 pepYKGKgI--~~~~e~I~~Ke 173 (177) . |+||+ |+||+||..|. T Consensus 81 v---k~kD~R~FlDGIYv~eK~ 99 (106) T 2zkr_e 81 V---KNKDIRKFLDGIYVSEKG 99 (106) T ss_dssp C---SSSCTTTCCCEEEEEEC- T ss_pred C---CCCCCCEEECCEEEEEEE T ss_conf 1---799842600677999973 No 19 >>3jyw_H 60S ribosomal protein L9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_H (H:80-179) Probab=99.75 E-value=8.8e-19 Score=128.91 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=76.5 Q ss_pred EEEEEEEEE--CCCCEEEEC----CCEEEE--EECCCCCCCCCCCCEEEEEEC--CCCEEEEEECCHHHHHHHHHHHHCC Q ss_conf 037778740--476301220----424999--951567655258850389976--9988999957998987999874100 Q gi|254780246|r 82 GYERKLEIS--GVGCRAFMD----GRNLKM--SLGFSHDVLYTPLEGISIFVS--KPTEIIVSGIDKQKVGHVAAEIRSY 151 (177) Q Consensus 82 Gf~~~L~lv--gvgy~v~~~----g~~l~l--~LG~sh~i~~~ip~~v~v~~~--k~~~I~i~G~dke~Vgq~AA~Ir~~ 151 (177) ||+|+|+++ |||+.+.++ |+.+++ +||+.+++.+.+++||++++. .+++|+|+|+|+|.|+|+||+|++. T Consensus 1 Gf~Ykmk~vYaHFPi~v~v~~~e~g~~veI~NFlGEK~~R~~~i~~gv~v~v~~~~kDeiiieG~d~E~VsqtAA~I~qa 80 (100) T 3jyw_H 1 GYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQI 80 (100) T ss_dssp CCCCEEEEECSSSCCEEECTTTTCSSEEEEESSTTCSSCEEEECCSSBCCEECSSSCSEEECCBSCSHHHHHHHHHHHHT T ss_pred CEEEEEEEEEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEECCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHCCCC T ss_conf 58999999886367899870045776238998406663078558998199986799989999967999986999873799 Q ss_pred CCCCCCCCCCE--EECCEEEEEE Q ss_conf 74798578743--4537099971 Q gi|254780246|r 152 RSAEPYKGKGI--RYSGEVIIRK 172 (177) Q Consensus 152 r~pepYKGKgI--~~~~e~I~~K 172 (177) ++. |+||+ |+||+||..| T Consensus 81 t~v---k~kD~R~FlDGIYv~eK 100 (100) T 3jyw_H 81 CRV---RNKDIRKFLDGIYVSHK 100 (100) T ss_dssp TCS---CSSCTTTCCCEEEEEEC T ss_pred CCC---CCCCCCEEECCEEEEEC T ss_conf 752---79985370067899839 No 20 >>3kd4_A Putative protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503} (A:367-506) Probab=63.53 E-value=8.1 Score=18.64 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=10.7 Q ss_pred CCCCCCCEEEEECCEEEEEECCCEEE Q ss_conf 10799758999799899990694699 Q gi|254780246|r 9 IQVPLGVDVAVEDHEIKVKGPKGQLS 34 (177) Q Consensus 9 I~IP~~V~v~i~~~~i~vkGp~G~l~ 34 (177) |.||+|.+|+--.....++.+.|+.+ T Consensus 65 i~lP~Gy~v~~lP~~~~i~~~~g~~~ 90 (140) T 3kd4_A 65 VTPAEGXKLQTSTQEQVISKPFGKVT 90 (140) T ss_dssp EEECTTCEECSCCSCEEEEETTEEEE T ss_pred EECCCCCEEEECCCCEEEECCCEEEE T ss_conf 99689988750799816857976899 No 21 >>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP} (A:298-374) Probab=45.86 E-value=21 Score=16.29 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=36.9 Q ss_pred CCCCEEEEECCEEEEEECCCEEEEEECCC-----E-EEEEECCEEEEEECCCCC Q ss_conf 99758999799899990694699982686-----3-999707589985055432 Q gi|254780246|r 12 PLGVDVAVEDHEIKVKGPKGQLSFMMSDG-----I-SVTLQEGMLSVATINGSK 59 (177) Q Consensus 12 P~~V~v~i~~~~i~vkGp~G~l~~~~~~~-----v-~i~~~~~~i~i~~~~~~k 59 (177) ++++++++.++.++|+...-.-++.++.. + +...++|-+.+....... T Consensus 21 ~edi~V~~~~~~L~I~~g~~~R~i~LP~~i~~~~i~~A~~~~GvL~I~~pK~~~ 74 (77) T 3igf_A 21 KKQVKLTQYGPEVTVEAGDQRRNIFLPPALSGRPITGAKFQNNYLIISFLEHHH 74 (77) T ss_dssp GGGCEEEEETTEEEEEETTEEEEEECCTTTTTCCEEEEEEETTEEEEEECCC-- T ss_pred HHHCEEEEECCEEEEEECCEECCCCCCHHHCCCCCCCEEEECCEEEEEEEECCC T ss_conf 677179998988999989998033498788278665249989989999984256 No 22 >>2wj7_A Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein, disease mutation, eye lens protein, methylation, polymorphism, glycoprotein; 2.63A {Homo sapiens} (A:22-65) Probab=43.10 E-value=16 Score=16.87 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.1 Q ss_pred CCCCEEEEECCEEEEEEC Q ss_conf 997589997998999906 Q gi|254780246|r 12 PLGVDVAVEDHEIKVKGP 29 (177) Q Consensus 12 P~~V~v~i~~~~i~vkGp 29 (177) |++++|.+.++.|.|.|. T Consensus 2 Peei~Vkv~~~~l~V~gk 19 (44) T 2wj7_A 2 PEELKVKVLGDVIEVHGK 19 (44) T ss_dssp GGGEEEEEETTEEEEEEE T ss_pred HHHEEEEEECCEEEEEEE T ss_conf 799699998998999999 No 23 >>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} (A:1-131,A:198-244) Probab=37.76 E-value=28 Score=15.54 Aligned_cols=48 Identities=15% Similarity=0.320 Sum_probs=35.9 Q ss_pred CCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEE-EE-EECCEEEEEE Q ss_conf 46451079975899979989999069469998268639-99-7075899850 Q gi|254780246|r 5 GKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGIS-VT-LQEGMLSVAT 54 (177) Q Consensus 5 gk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~-i~-~~~~~i~i~~ 54 (177) .|.++.|-+++-++.+++.+++.+--+++.... .+. .+ .+++.+.+.+ T Consensus 23 ~k~~~pil~~ilie~~~~~l~l~atd~ei~i~~--~i~~~~i~e~G~i~v~a 72 (178) T 3d1g_A 23 GRPTLPILGNLLLQVADGTLSLTGTDLEMEMVA--RVALVQPHEPGATTVPA 72 (178) T ss_dssp SCCCSGGGGEEEEEEETTEEEEEEECSSEEEEE--EEECCSCCBCEEEEEEH T ss_pred CCCCHHHHCCEEEEEECCEEEEEEECCCEEEEE--EECCCEECCCCEEEEEE T ss_conf 898637870889999899999999888559999--98142104573699800 No 24 >>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa} (X:146-238) Probab=36.37 E-value=25 Score=15.75 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=32.1 Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCC Q ss_conf 15676552588503899769988999957998987999874100 Q gi|254780246|r 108 GFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSY 151 (177) Q Consensus 108 G~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~ 151 (177) |+.-.|+.+.|..-+....++..+.+.|++-+....++..+++. T Consensus 46 g~p~lRy~EP~~~~~~~flnp~~v~i~Gi~~~e~~~l~~~L~~~ 89 (93) T 3eat_X 46 EFPILRFCEPPVEGDASFINPSEFHYDGIAPEQRGELLASLRRC 89 (93) T ss_dssp CCEEECCCCCC----------CCEEEESSCTTTHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCEEEEECCCCEEECCCCHHHHHHHHHHHHHH T ss_conf 76148972699886256406661344488878989999999999 No 25 >>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis} (A:) Probab=28.18 E-value=31 Score=15.22 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=16.4 Q ss_pred CCCEEEEECCEEEEEECCCEEEE Q ss_conf 97589997998999906946999 Q gi|254780246|r 13 LGVDVAVEDHEIKVKGPKGQLSF 35 (177) Q Consensus 13 ~~V~v~i~~~~i~vkGp~G~l~~ 35 (177) .||.+.+++..+.+.+|.|.++- T Consensus 17 ~gI~L~~e~~kL~~~ap~g~lt~ 39 (78) T 2jug_A 17 LGVRLWVEGERLRFQAPPGVMTP 39 (78) T ss_dssp HTCEEEEETTEEEEECCTTTTCH T ss_pred CCCEEEEECCEEEEECCCCCCCH T ss_conf 89889998999889678777999 No 26 >>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} (A:148-235) Probab=25.92 E-value=44 Score=14.35 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=35.7 Q ss_pred CEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 503899769988999957998987999874100747985787 Q gi|254780246|r 119 EGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGK 160 (177) Q Consensus 119 ~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK 160 (177) .++++.++..+.+++.+.+.+.|-...+.|+..-....|.|. T Consensus 30 tg~~I~i~~~~~v~i~~g~~~~v~~A~~~I~~i~~e~~~~~~ 71 (88) T 2z0s_A 30 TECKIFVARNGRIHLECPNEDLEAIAVMAIKIIDEEAYTSGL 71 (88) T ss_dssp HCCEEEEETTTEEEEECSCHHHHHHHHHHHHHHHHCSCCTTC T ss_pred CCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 785999918908999748889999999999999874436518 No 27 >>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} (I:156-251) Probab=25.79 E-value=19 Score=16.46 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=38.9 Q ss_pred CCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE Q ss_conf 850389976998899995799898799987410074798578743 Q gi|254780246|r 118 LEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGI 162 (177) Q Consensus 118 p~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKgI 162 (177) --++++.+++...+.+.+.+.+.+-...+.|+.+-...+|.|+=. T Consensus 28 ~tg~~I~i~~~~~~~~i~g~~~~~~~A~~~I~~~~~~~~~~~~v~ 72 (96) T 2je6_I 28 KSGCSIFVANNGRIWATCPSRFSEEILIEAIRKIENESHIKGLTD 72 (96) T ss_dssp TC---CEECTTSEEEC-----CTTCCTHHHHTTTTTTTTCC---- T ss_pred CCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHH T ss_conf 736899976635799714881056899999997651554235578 No 28 >>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} (A:95-190) Probab=25.03 E-value=46 Score=14.26 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=24.1 Q ss_pred CCCCEEEEECCEEEEEECCC----------EE--EEEECC-----CEEEEE-ECCEEEEEEC Q ss_conf 99758999799899990694----------69--998268-----639997-0758998505 Q gi|254780246|r 12 PLGVDVAVEDHEIKVKGPKG----------QL--SFMMSD-----GISVTL-QEGMLSVATI 55 (177) Q Consensus 12 P~~V~v~i~~~~i~vkGp~G----------~l--~~~~~~-----~v~i~~-~~~~i~i~~~ 55 (177) |++++|+++++.+++.|... +. ++.|+. .++... +|+.+.+... T Consensus 31 ~edi~v~~~~~~l~i~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~nGvL~I~~p 92 (96) T 2bol_A 31 AEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAP 92 (96) T ss_dssp TTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSSEEEEEEE T ss_pred HHHCEEEEECCEEEEEEEEEEECCCCEEEEEEEEEEECCCCCCHHHEEEEECCCCEEEEEEC T ss_conf 56719999999999999980127898899999999989876474477999768975999967 No 29 >>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A (A:617-685,A:744-752) Probab=22.31 E-value=52 Score=13.94 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=29.7 Q ss_pred CCCCCCCEEEEEECC-CCEEEEEECCHHHHHHHHHHHHCC Q ss_conf 552588503899769-988999957998987999874100 Q gi|254780246|r 113 VLYTPLEGISIFVSK-PTEIIVSGIDKQKVGHVAAEIRSY 151 (177) Q Consensus 113 i~~~ip~~v~v~~~k-~~~I~i~G~dke~Vgq~AA~Ir~~ 151 (177) +.-.+++++.+-+.+ |+..+|+| +.+.+.++.+.+++. T Consensus 16 v~~~l~~~v~iA~~Nsp~q~VisG-~~~~i~~l~~~l~~~ 54 (78) T 3hhd_A 16 CKQRCPPGVVPACHNSKDTVTISG-PQAPVFEFVEQLRKE 54 (78) T ss_dssp HHHHCCTTCEEEEEEETTEEEEEE-EHHHHHHHHHHHHHT T ss_pred HHHHCCCCEEEEEECCCCEEEEEC-CHHHHHHHHHHHHHC T ss_conf 997655881896764898699989-789999999888866 Done!