HHsearch results for GI: 254780246 and protein with PDBid: 1nkw_E
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=0 Score=447.61 Aligned_cols=176 Identities=45% Similarity=0.748 Sum_probs=174.6
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC
Q ss_conf 97444645107997589997998999906946999826863999707589985055432201338887521125897511
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT 80 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt 80 (177)
||||||+||.||++|+|+++++.|+|+||+|+|++.+++++.++.+++++.+.+++++++++|||||+||||+|||+||+
T Consensus 28 MSRIGk~pI~IP~gV~v~i~~~~v~VkGp~G~ls~~~~~~v~i~~~~~~i~v~~~~~~k~~kal~GT~rslI~NmI~GVs 107 (212)
T 1nkw_E 28 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVS 107 (212)
T ss_pred CCHHCCCCEECCCCCEEEEECCEEEEEECCEEEEEECCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 06304776117999789997999999908956999848872888459999999775413689999899987536799982
Q ss_pred EEEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 00377787404763012204249999515676552588503899769988999957998987999874100747985787
Q gi|254780246|r 81 KGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGK 160 (177)
Q Consensus 81 ~Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK 160 (177)
+||+|+|+++|+||||+++++.|.|+|||||++.+.||+||+++++++|+|+|+|+|||.||||||+||++|+|||||||
T Consensus 108 ~Gf~k~L~lvGvGyra~v~~~~L~l~LG~Sh~i~~~IP~gV~v~v~~~t~I~I~GiDKe~Vgq~AA~Ir~~rkpepYKGK 187 (212)
T 1nkw_E 108 DGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGK 187 (212)
T ss_pred CCEEEEEEEEECCCCCEECCCEEEEEECCCCCEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 35089999864313111057455777501143464289985898448998999978999999999998614899896898
Q ss_pred CEEECCEEEEEEECCC
Q ss_conf 4345370999710566
Q gi|254780246|r 161 GIRYSGEVIIRKEGKK 176 (177)
Q Consensus 161 gI~~~~e~I~~KegKk 176 (177)
||||+||||++|||||
T Consensus 188 GI~~~ge~I~~K~GKk 203 (212)
T 1nkw_E 188 GVRFVGEQIALKAGKA 203 (212)
T ss_pred CCCCCCEEEEEECCCC
T ss_conf 7079788999826544