HHsearch results for GI: 254780246 and protein with PDBid: 1rl6_A
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=0 Score=436.44 Aligned_cols=175 Identities=47% Similarity=0.808 Sum_probs=173.4
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCE
Q ss_conf 74446451079975899979989999069469998268639997075899850554322013388875211258975110
Q gi|254780246|r 2 SRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTK 81 (177)
Q Consensus 2 SrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~ 81 (177)
|||||+||.||++|+|+++++.++|+||+|+|++.+++.+.+..+++.+.+.+++++++++|||||+||||+|||+||++
T Consensus 1 SrIgk~pI~IP~gV~v~i~~~~v~vkGp~G~l~~~~~~~~~~~~~~~~i~v~~~~~~k~~ka~~GT~rslI~Nmi~GVt~ 80 (177)
T 1rl6_A 1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK 80 (177)
T ss_dssp ------CEECCTTCEEEEETTEEEEEETTEEEEEECCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCEECCCCCEEEEECCEEEEEECCEEEEEEECCCCCCEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 96566661059998899979999999699689976267410110686899996788427889999999999988803001
Q ss_pred EEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 03777874047630122042499995156765525885038997699889999579989879998741007479857874
Q gi|254780246|r 82 GYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKG 161 (177)
Q Consensus 82 Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKg 161 (177)
||+|+|+++|+||||+++|+.|.|+|||||++.+.||+||+++++++|+|+|+|+|||+||||||+||++|+||||||||
T Consensus 81 Gf~~~L~lvGvGyr~~~~g~~l~l~LG~sh~i~~~iP~gv~v~~~~~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKG 160 (177)
T 1rl6_A 81 GYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKG 160 (177)
T ss_dssp CEEEEEEEESTTCEEEEETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCCE
T ss_pred CEEEEEEEECCCCEEECCCCEEEEECCCCCCEEECCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 13898786137751573698999955865765862999869995799745899578999989999987307998825998
Q ss_pred EEECCEEEEEEECCC
Q ss_conf 345370999710566
Q gi|254780246|r 162 IRYSGEVIIRKEGKK 176 (177)
Q Consensus 162 I~~~~e~I~~KegKk 176 (177)
|||+||+|+||||||
T Consensus 161 I~~~~e~i~~K~gKk 175 (177)
T 1rl6_A 161 IRYEGELVRLKEGKT 175 (177)
T ss_dssp EEETTCCCCC-----
T ss_pred CCCCCEEEEECCCCC
T ss_conf 668784999737556