HHsearch results for GI: 254780246 and protein with PDBid: 1vq8_E
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=0 Score=372.38 Aligned_cols=169 Identities=25% Similarity=0.383 Sum_probs=158.3
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEEC
Q ss_conf 97444645107997589997998999906946999826-86399970758998505543220133888752112589751
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGV 79 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GV 79 (177)
|||+ ||.||++|+|+++++.++|+||+|+|+++++ +.++++++++.+.+++++++++++|+|||+||||+|||+||
T Consensus 1 MsRi---~I~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~~i~i~~~~~~i~v~~~~~~k~~~a~~Gt~rslI~NmI~GV 77 (178)
T 1vq8_E 1 MPRV---ELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGV 77 (178)
T ss_dssp -CEE---EEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC---CEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCEEEEE
T ss_conf 9856---6457999689997999999868959999932883899983998999427752889999999999874325400
Q ss_pred CEEEEEEEEEECCCCE--EEECCCEEEEE--ECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 1003777874047630--12204249999--5156765525885038997699889999579989879998741007479
Q gi|254780246|r 80 TKGYERKLEISGVGCR--AFMDGRNLKMS--LGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAE 155 (177)
Q Consensus 80 t~Gf~~~L~lvgvgy~--v~~~g~~l~l~--LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pe 155 (177)
++||+++|+++|+||+ ++.+|+.|.|. ||||||+.++||++++++++ +|+|+|+|+|||.||||||+||++||
T Consensus 78 t~Gf~k~LelvgvG~~~~~~~~g~~l~l~~~lG~shpi~~~ip~~v~v~~~-~~~I~i~G~DKq~Vgq~AA~Ir~~r~-- 154 (178)
T 1vq8_E 78 TEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEID-GEELTVSGPDIEAVGQTAADIEQLTR-- 154 (178)
T ss_dssp HTCEEEEEEEECSSSCCEEEEETTEEEEESGGGCSSCEEEECCTTCEEEEE-TTEEEEEESCHHHHHHHHHHHHHTTC--
T ss_pred CCCEEEEEEEEEEECCEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEC-CCEEEEEECCHHHHHHHHHHHHCCCC--
T ss_conf 561588899999702138861596699998405311056617898089974-88899996898997299999734688--
Q ss_pred CCCCCCE--EECCEEEEEEECCC
Q ss_conf 8578743--45370999710566
Q gi|254780246|r 156 PYKGKGI--RYSGEVIIRKEGKK 176 (177)
Q Consensus 156 pYKGKgI--~~~~e~I~~KegKk 176 (177)
|||||+ |||||||+|||||.
T Consensus 155 -ykgKgir~~~dge~I~rK~gK~ 176 (178)
T 1vq8_E 155 -INDKDVRVFQDGVYITRKPNRG 176 (178)
T ss_dssp -CSSSCTTTCCCEEEEEECC---
T ss_pred -CCCCCCEEEECCEEEEECCCCC
T ss_conf -9999602853788999878877