HHsearch results for GI: 254780246 and protein with PDBid: 1vq8_E

>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00  E-value=0  Score=372.38  Aligned_cols=169  Identities=25%  Similarity=0.383  Sum_probs=158.3

Q ss_pred             CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEEC
Q ss_conf             97444645107997589997998999906946999826-86399970758998505543220133888752112589751
Q gi|254780246|r    1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGV   79 (177)
Q Consensus         1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GV   79 (177)
                      |||+   ||.||++|+|+++++.++|+||+|+|+++++ +.++++++++.+.+++++++++++|+|||+||||+|||+||
T Consensus         1 MsRi---~I~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~~i~i~~~~~~i~v~~~~~~k~~~a~~Gt~rslI~NmI~GV   77 (178)
T 1vq8_E            1 MPRV---ELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGV   77 (178)
T ss_dssp             -CEE---EEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC---CEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCEEEEE
T ss_conf             9856---6457999689997999999868959999932883899983998999427752889999999999874325400


Q ss_pred             CEEEEEEEEEECCCCE--EEECCCEEEEE--ECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf             1003777874047630--12204249999--5156765525885038997699889999579989879998741007479
Q gi|254780246|r   80 TKGYERKLEISGVGCR--AFMDGRNLKMS--LGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAE  155 (177)
Q Consensus        80 t~Gf~~~L~lvgvgy~--v~~~g~~l~l~--LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pe  155 (177)
                      ++||+++|+++|+||+  ++.+|+.|.|.  ||||||+.++||++++++++ +|+|+|+|+|||.||||||+||++||  
T Consensus        78 t~Gf~k~LelvgvG~~~~~~~~g~~l~l~~~lG~shpi~~~ip~~v~v~~~-~~~I~i~G~DKq~Vgq~AA~Ir~~r~--  154 (178)
T 1vq8_E           78 TEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEID-GEELTVSGPDIEAVGQTAADIEQLTR--  154 (178)
T ss_dssp             HTCEEEEEEEECSSSCCEEEEETTEEEEESGGGCSSCEEEECCTTCEEEEE-TTEEEEEESCHHHHHHHHHHHHHTTC--
T ss_pred             CCCEEEEEEEEEEECCEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEC-CCEEEEEECCHHHHHHHHHHHHCCCC--
T ss_conf             561588899999702138861596699998405311056617898089974-88899996898997299999734688--


Q ss_pred             CCCCCCE--EECCEEEEEEECCC
Q ss_conf             8578743--45370999710566
Q gi|254780246|r  156 PYKGKGI--RYSGEVIIRKEGKK  176 (177)
Q Consensus       156 pYKGKgI--~~~~e~I~~KegKk  176 (177)
                       |||||+  |||||||+|||||.
T Consensus       155 -ykgKgir~~~dge~I~rK~gK~  176 (178)
T 1vq8_E          155 -INDKDVRVFQDGVYITRKPNRG  176 (178)
T ss_dssp             -CSSSCTTTCCCEEEEEECC---
T ss_pred             -CCCCCCEEEECCEEEEECCCCC
T ss_conf             -9999602853788999878877