HHsearch results for GI: 254780246 and protein with PDBid: 2zjr_E

>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00  E-value=0  Score=434.44  Aligned_cols=176  Identities=45%  Similarity=0.748  Sum_probs=174.2

Q ss_pred             CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC
Q ss_conf             97444645107997589997998999906946999826863999707589985055432201338887521125897511
Q gi|254780246|r    1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT   80 (177)
Q Consensus         1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt   80 (177)
                      ||||||+||.||++|+|+++++.|+|+||+|+|++.+++.+.+.++++++.+.++.++++++|||||+||||+|||+||+
T Consensus         1 MSrigk~pI~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~kal~gt~rs~i~Nmi~GVs   80 (185)
T 2zjr_E            1 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVS   80 (185)
T ss_dssp             ----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCSSSCCBCCSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCEEEEECCEEEEECCCEEEEEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCEEEEEC
T ss_conf             97245675207999889997999999929834998779974899637614898503114567777779987615448875


Q ss_pred             EEEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             00377787404763012204249999515676552588503899769988999957998987999874100747985787
Q gi|254780246|r   81 KGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGK  160 (177)
Q Consensus        81 ~Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK  160 (177)
                      +||+++|+++|+|||++++++.|.|+|||||++.+.||++|+++++++|+|+|+|+|||+||||||+||++|+|||||||
T Consensus        81 ~Gf~~~L~lvgvgf~~~v~~~~l~l~LG~Sh~i~~~iP~~v~v~~~k~t~I~i~G~dke~Vgq~Aa~Ir~~r~pepYKGK  160 (185)
T 2zjr_E           81 DGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGK  160 (185)
T ss_dssp             HCEEEEEECBSTTCCCCCBTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCC
T ss_pred             CCCEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             00589999988776230157376677512044465189975899568999999978999999999998624899896898


Q ss_pred             CEEECCEEEEEEECCC
Q ss_conf             4345370999710566
Q gi|254780246|r  161 GIRYSGEVIIRKEGKK  176 (177)
Q Consensus       161 gI~~~~e~I~~KegKk  176 (177)
                      ||||+||||.+|||||
T Consensus       161 Gi~~~ge~I~~K~gKk  176 (185)
T 2zjr_E          161 GVRFVGEQIALKAGKA  176 (185)
T ss_dssp             BCCCSSCCCCCCCCC-
T ss_pred             CCCCCCEEEEEECCCC
T ss_conf             7279798999807544