HHsearch results for GI: 254780246 and protein with PDBid: 2zkr_e
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=0 Score=362.56 Aligned_cols=171 Identities=23% Similarity=0.326 Sum_probs=156.2
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEE---ECCEEEEEECCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 97444645107997589997998999906946999826-8639997---0758998505543220133888752112589
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTL---QEGMLSVATINGSKKARAAWGMSRTMINNLF 76 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~---~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi 76 (177)
||+++++||.||++|+|+++++.++|+||+|+|++.|+ +.+++.. +++.+.+.++.++++++|+|||+||||+|||
T Consensus 2 ~~i~~~~pI~IP~gV~v~i~~~~v~vkGpkG~L~~~~~~~~v~~~~~~~~~~~i~v~~~~~~k~~ka~~Gt~rslI~Nmi 81 (192)
T 2zkr_e 2 KTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMI 81 (192)
T ss_dssp --------CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEETTTTCEEEEECSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHCEE
T ss_conf 72015986877999899998999999959918999965887899998356887999348777767654565898874101
Q ss_pred EECCEEEEEEEEEECCCCEEEE----CCCEEEEE--ECCCCCCCCCCCCEEEE--EECCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 7511003777874047630122----04249999--51567655258850389--9769988999957998987999874
Q gi|254780246|r 77 HGVTKGYERKLEISGVGCRAFM----DGRNLKMS--LGFSHDVLYTPLEGISI--FVSKPTEIIVSGIDKQKVGHVAAEI 148 (177)
Q Consensus 77 ~GVt~Gf~~~L~lvgvgy~v~~----~g~~l~l~--LG~sh~i~~~ip~~v~v--~~~k~~~I~i~G~dke~Vgq~AA~I 148 (177)
+|||+||+++|+++|+||||++ +|+.|.++ |||||++.+++|.++.+ +++++|+|+|+|+|||.||||||+|
T Consensus 82 ~GVt~Gf~k~LelvGVGyra~v~~~~~g~~l~~~l~lg~~~~~~v~ip~~~~v~v~~~~~t~I~i~GiDKq~Vgq~AA~I 161 (192)
T 2zkr_e 82 KGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALI 161 (192)
T ss_dssp HHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHHHHHHHHH
T ss_pred EEECCCEEEEEEEEEECCEEEEEEECCCCEEEEEEEECCCEEEEECCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHC
T ss_conf 53037699999998751305898706883899986743205687447788127984288978999706699986999865
Q ss_pred HCCCCCCCCCCCCEE--ECCEEEEEEEC
Q ss_conf 100747985787434--53709997105
Q gi|254780246|r 149 RSYRSAEPYKGKGIR--YSGEVIIRKEG 174 (177)
Q Consensus 149 r~~r~pepYKGKgI~--~~~e~I~~Keg 174 (177)
|+|||||||||| +|||||++|+-
T Consensus 162 ---r~pepyKGKGiR~f~dG~yi~~Kg~ 186 (192)
T 2zkr_e 162 ---QQATTVKNKDIRKFLDGIYVSEKGT 186 (192)
T ss_dssp ---HHHTCCSSSCTTTCCCEEEEEEC--
T ss_pred ---CCCCCCCCCCCCEEECCEEEEEEEE
T ss_conf ---8998537998627005679998665