HHsearch results for GI: 254780246 and protein with PDBid: 2zkr_e

>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00  E-value=0  Score=362.56  Aligned_cols=171  Identities=23%  Similarity=0.326  Sum_probs=156.2

Q ss_pred             CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEE---ECCEEEEEECCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             97444645107997589997998999906946999826-8639997---0758998505543220133888752112589
Q gi|254780246|r    1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTL---QEGMLSVATINGSKKARAAWGMSRTMINNLF   76 (177)
Q Consensus         1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~---~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi   76 (177)
                      ||+++++||.||++|+|+++++.++|+||+|+|++.|+ +.+++..   +++.+.+.++.++++++|+|||+||||+|||
T Consensus         2 ~~i~~~~pI~IP~gV~v~i~~~~v~vkGpkG~L~~~~~~~~v~~~~~~~~~~~i~v~~~~~~k~~ka~~Gt~rslI~Nmi   81 (192)
T 2zkr_e            2 KTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMI   81 (192)
T ss_dssp             --------CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEETTTTCEEEEECSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHCEE
T ss_conf             72015986877999899998999999959918999965887899998356887999348777767654565898874101


Q ss_pred             EECCEEEEEEEEEECCCCEEEE----CCCEEEEE--ECCCCCCCCCCCCEEEE--EECCCCEEEEEECCHHHHHHHHHHH
Q ss_conf             7511003777874047630122----04249999--51567655258850389--9769988999957998987999874
Q gi|254780246|r   77 HGVTKGYERKLEISGVGCRAFM----DGRNLKMS--LGFSHDVLYTPLEGISI--FVSKPTEIIVSGIDKQKVGHVAAEI  148 (177)
Q Consensus        77 ~GVt~Gf~~~L~lvgvgy~v~~----~g~~l~l~--LG~sh~i~~~ip~~v~v--~~~k~~~I~i~G~dke~Vgq~AA~I  148 (177)
                      +|||+||+++|+++|+||||++    +|+.|.++  |||||++.+++|.++.+  +++++|+|+|+|+|||.||||||+|
T Consensus        82 ~GVt~Gf~k~LelvGVGyra~v~~~~~g~~l~~~l~lg~~~~~~v~ip~~~~v~v~~~~~t~I~i~GiDKq~Vgq~AA~I  161 (192)
T 2zkr_e           82 KGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALI  161 (192)
T ss_dssp             HHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHHHHHHHHH
T ss_pred             EEECCCEEEEEEEEEECCEEEEEEECCCCEEEEEEEECCCEEEEECCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHC
T ss_conf             53037699999998751305898706883899986743205687447788127984288978999706699986999865


Q ss_pred             HCCCCCCCCCCCCEE--ECCEEEEEEEC
Q ss_conf             100747985787434--53709997105
Q gi|254780246|r  149 RSYRSAEPYKGKGIR--YSGEVIIRKEG  174 (177)
Q Consensus       149 r~~r~pepYKGKgI~--~~~e~I~~Keg  174 (177)
                         |+||||||||||  +|||||++|+-
T Consensus       162 ---r~pepyKGKGiR~f~dG~yi~~Kg~  186 (192)
T 2zkr_e          162 ---QQATTVKNKDIRKFLDGIYVSEKGT  186 (192)
T ss_dssp             ---HHHTCCSSSCTTTCCCEEEEEEC--
T ss_pred             ---CCCCCCCCCCCCEEECCEEEEEEEE
T ss_conf             ---8998537998627005679998665