HHsearch results for GI: 254780246 and protein with PDBid: 3jyw_H

>3jyw_H 60S ribosomal protein L9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_H
Probab=100.00  E-value=0  Score=353.76  Aligned_cols=165  Identities=25%  Similarity=0.382  Sum_probs=151.3

Q ss_pred             CCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECC-CEEE-EEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCEE
Q ss_conf             46451079975899979989999069469998268-6399-970758998505543220133888752112589751100
Q gi|254780246|r    5 GKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSD-GISV-TLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTKG   82 (177)
Q Consensus         5 gk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~-~v~i-~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~G   82 (177)
                      .++||+||++|+|+++++.++|+||+|+|+++|++ .+.+ ..+++.+.+.+++++++++|+|||+||||+|||+||++|
T Consensus         1 tk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~~~~~~~~~~~i~~~~~~~~kk~~a~~gt~rsli~NmI~GVt~G   80 (179)
T 3jyw_H            1 TEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKG   80 (179)
T ss_dssp             CEEEECCCTTCEEEEETTEEEEECSSCEEEEECCCSSCBCCCEETTEEEEECSCCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCEEEEECCC
T ss_conf             99503779998999979999998789899999469856899938988999837986778999999998762228745575


Q ss_pred             EEEEEEEECCCCEEEEC--------CCEEEEEECCCCCCCCCCCCEEEEEE--CCCCEEEEEECCHHHHHHHHHHHHCCC
Q ss_conf             37778740476301220--------42499995156765525885038997--699889999579989879998741007
Q gi|254780246|r   83 YERKLEISGVGCRAFMD--------GRNLKMSLGFSHDVLYTPLEGISIFV--SKPTEIIVSGIDKQKVGHVAAEIRSYR  152 (177)
Q Consensus        83 f~~~L~lvgvgy~v~~~--------g~~l~l~LG~sh~i~~~ip~~v~v~~--~k~~~I~i~G~dke~Vgq~AA~Ir~~r  152 (177)
                      |+++|+++|+||||+++        ++.|.++||||||+.++||++|++++  +++|+|+|+|+|||.||||||+|   |
T Consensus        81 f~~~L~lvGvGyr~~v~~~~~~~~~~~~l~~~lG~sh~~~~~ip~gv~v~v~~~~~t~I~i~G~dke~Vgq~AA~I---r  157 (179)
T 3jyw_H           81 YKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADL---Q  157 (179)
T ss_dssp             CCCEEEEECSSSCCEEECTTTTCSSEEEEESSTTCSSCEEEECCSSBCCEECSSSCSEEECCBSCSHHHHHHHHHH---H
T ss_pred             EEEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCHHHHHHHHHHC---C
T ss_conf             5999999887578898762356776248998305640288458998489976799989999968999986999864---7


Q ss_pred             CCCCCCCCCE--EECCEEEEEE
Q ss_conf             4798578743--4537099971
Q gi|254780246|r  153 SAEPYKGKGI--RYSGEVIIRK  172 (177)
Q Consensus       153 ~pepYKGKgI--~~~~e~I~~K  172 (177)
                      +|||||||||  |||||||.+|
T Consensus       158 ~~~pyKgKgiR~f~dG~yi~~K  179 (179)
T 3jyw_H          158 QICRVRNKDIRKFLDGIYVSHK  179 (179)
T ss_dssp             HTTCSCSSCTTTCCCEEEEEEC
T ss_pred             CCCCCCCCCCCEEECCEEEEEC
T ss_conf             9963479985470167899839