Query gi|254780246|ref|YP_003064659.1| 50S ribosomal protein L6 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 177
No_of_seqs 130 out of 2146
Neff 6.6
Searched_HMMs 23785
Date Tue May 24 02:17:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780246.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkw_E 50S ribosomal protein L 100.0 0 0 447.6 19.6 176 1-176 28-203 (212)
2 3bbo_I Ribosomal protein L6; l 100.0 0 0 444.3 10.8 176 1-176 43-219 (223)
3 1rl6_A Protein (ribosomal prot 100.0 0 0 436.4 14.0 175 2-176 1-175 (177)
4 2j01_H 50S ribosomal protein L 100.0 0 0 438.7 3.2 176 1-176 1-176 (180)
5 2zjr_E 50S ribosomal protein L 100.0 0 0 434.4 2.0 176 1-176 1-176 (185)
6 3ofq_G 50S ribosomal protein L 100.0 0 0 437.3 -0.6 176 2-177 1-176 (176)
7 1vq8_E 50S ribosomal protein L 100.0 0 0 372.4 14.6 169 1-176 1-176 (178)
8 2zkr_e 60S ribosomal protein L 100.0 0 0 362.6 13.9 171 1-174 2-186 (192)
9 3jyw_H 60S ribosomal protein L 100.0 0 0 353.8 7.1 165 5-172 1-179 (179)
10 2cql_A OK/SW-CL.103, 60S ribos 99.9 7.4E-26 3.1E-30 169.1 5.0 86 1-86 8-98 (100)
11 2bol_A TSP36, small heat shock 90.8 0.79 3.3E-05 23.6 10.6 139 11-161 124-296 (314)
12 3lm8_A Thiamine pyrophosphokin 67.7 6 0.00025 18.5 4.7 82 47-141 133-218 (222)
13 3k94_A Thiamin pyrophosphokina 32.4 24 0.001 15.0 5.9 86 40-139 123-213 (223)
14 2jug_A TUBC protein; docking d 28.7 21 0.0009 15.3 1.8 23 13-35 17-39 (78)
15 2wj7_A Alpha-crystallin B chai 28.5 27 0.0012 14.7 2.3 19 39-57 24-42 (94)
16 2klr_A Alpha-crystallin B chai 27.2 29 0.0012 14.5 2.3 14 41-54 89-102 (175)
17 2wj5_A Heat shock protein beta 22.3 37 0.0015 13.9 5.4 18 40-57 26-43 (101)
No 1
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=0 Score=447.61 Aligned_cols=176 Identities=45% Similarity=0.748 Sum_probs=174.6
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC
Q ss_conf 97444645107997589997998999906946999826863999707589985055432201338887521125897511
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT 80 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt 80 (177)
||||||+||.||++|+|+++++.|+|+||+|+|++.+++++.++.+++++.+.+++++++++|||||+||||+|||+||+
T Consensus 28 MSRIGk~pI~IP~gV~v~i~~~~v~VkGp~G~ls~~~~~~v~i~~~~~~i~v~~~~~~k~~kal~GT~rslI~NmI~GVs 107 (212)
T 1nkw_E 28 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVS 107 (212)
T ss_pred CCHHCCCCEECCCCCEEEEECCEEEEEECCEEEEEECCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 06304776117999789997999999908956999848872888459999999775413689999899987536799982
Q ss_pred EEEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 00377787404763012204249999515676552588503899769988999957998987999874100747985787
Q gi|254780246|r 81 KGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGK 160 (177)
Q Consensus 81 ~Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK 160 (177)
+||+|+|+++|+||||+++++.|.|+|||||++.+.||+||+++++++|+|+|+|+|||.||||||+||++|+|||||||
T Consensus 108 ~Gf~k~L~lvGvGyra~v~~~~L~l~LG~Sh~i~~~IP~gV~v~v~~~t~I~I~GiDKe~Vgq~AA~Ir~~rkpepYKGK 187 (212)
T 1nkw_E 108 DGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGK 187 (212)
T ss_pred CCEEEEEEEEECCCCCEECCCEEEEEECCCCCEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 35089999864313111057455777501143464289985898448998999978999999999998614899896898
Q ss_pred CEEECCEEEEEEECCC
Q ss_conf 4345370999710566
Q gi|254780246|r 161 GIRYSGEVIIRKEGKK 176 (177)
Q Consensus 161 gI~~~~e~I~~KegKk 176 (177)
||||+||||++|||||
T Consensus 188 GI~~~ge~I~~K~GKk 203 (212)
T 1nkw_E 188 GVRFVGEQIALKAGKA 203 (212)
T ss_pred CCCCCCEEEEEECCCC
T ss_conf 7079788999826544
No 2
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana}
Probab=100.00 E-value=0 Score=444.33 Aligned_cols=176 Identities=44% Similarity=0.758 Sum_probs=171.9
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEEC-CEEEEEECCCCCCCHHHHHHHHHEEEEEEEEC
Q ss_conf 97444645107997589997998999906946999826863999707-58998505543220133888752112589751
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQE-GMLSVATINGSKKARAAWGMSRTMINNLFHGV 79 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~-~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GV 79 (177)
||||||+||.||+||+|+++++.++|+||+|+|++.+++.+.+..++ +.+.+.+++++++++|||||+||||+|||+||
T Consensus 43 MSRIGK~pI~IP~gV~V~i~~~~i~VkGP~G~L~~~~~~~i~i~~~~~~~i~v~~~~~~kk~kal~GT~rslI~NmI~GV 122 (223)
T 3bbo_I 43 ESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGV 122 (223)
T ss_dssp CCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEEECCSSCEEEECSSSCEEEECSSCCTTHHHHHHHHTTTTTHHHHHT
T ss_pred CCHHCCCCEECCCCCEEEEECCEEEEECCCEEEEEEECCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10327776007999889996999999857989999968974799726619998236563679999999999997676563
Q ss_pred CEEEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 10037778740476301220424999951567655258850389976998899995799898799987410074798578
Q gi|254780246|r 80 TKGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKG 159 (177)
Q Consensus 80 t~Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKG 159 (177)
++||+|+|+++|+|||++++++.|.|+|||||||.+.||++++++++++|+|+|+|+|||+||||||+||++|+||||||
T Consensus 123 t~Gf~k~LelvGvGyra~v~g~~l~l~LG~SHpi~~~IP~gIkv~v~k~t~I~I~GiDKe~Vgq~AA~IRs~R~pepYKG 202 (223)
T 3bbo_I 123 SKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKG 202 (223)
T ss_dssp TTCEEECEECCSTTCCEEECSSEEEECSSCSSCEEEECCSSEEEECSSTTBCEEEESSSHHHHHHHHHTTSSSCCCTTTC
T ss_pred HHCEEEEEEECCCCEEEEECCCEEEEEECCCCCEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 21004899971265179852758999815667638978987279956999999996889999999999971789989688
Q ss_pred CCEEECCEEEEEEECCC
Q ss_conf 74345370999710566
Q gi|254780246|r 160 KGIRYSGEVIIRKEGKK 176 (177)
Q Consensus 160 KgI~~~~e~I~~KegKk 176 (177)
|||||+||+|.||||||
T Consensus 203 KGI~y~~e~I~~K~gKk 219 (223)
T 3bbo_I 203 KGVKYSDEIVRRKEGKA 219 (223)
T ss_dssp CSCEETTCCCCCCCCCC
T ss_pred CCCCCCCEEEEEECCCC
T ss_conf 78558884999735665
No 3
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=0 Score=436.44 Aligned_cols=175 Identities=47% Similarity=0.808 Sum_probs=173.4
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCE
Q ss_conf 74446451079975899979989999069469998268639997075899850554322013388875211258975110
Q gi|254780246|r 2 SRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTK 81 (177)
Q Consensus 2 SrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~ 81 (177)
|||||+||.||++|+|+++++.++|+||+|+|++.+++.+.+..+++.+.+.+++++++++|||||+||||+|||+||++
T Consensus 1 SrIgk~pI~IP~gV~v~i~~~~v~vkGp~G~l~~~~~~~~~~~~~~~~i~v~~~~~~k~~ka~~GT~rslI~Nmi~GVt~ 80 (177)
T 1rl6_A 1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK 80 (177)
T ss_dssp ------CEECCTTCEEEEETTEEEEEETTEEEEEECCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCEECCCCCEEEEECCEEEEEECCEEEEEEECCCCCCEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 96566661059998899979999999699689976267410110686899996788427889999999999988803001
Q ss_pred EEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 03777874047630122042499995156765525885038997699889999579989879998741007479857874
Q gi|254780246|r 82 GYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKG 161 (177)
Q Consensus 82 Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKg 161 (177)
||+|+|+++|+||||+++|+.|.|+|||||++.+.||+||+++++++|+|+|+|+|||+||||||+||++|+||||||||
T Consensus 81 Gf~~~L~lvGvGyr~~~~g~~l~l~LG~sh~i~~~iP~gv~v~~~~~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKG 160 (177)
T 1rl6_A 81 GYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKG 160 (177)
T ss_dssp CEEEEEEEESTTCEEEEETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCCE
T ss_pred CEEEEEEEECCCCEEECCCCEEEEECCCCCCEEECCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 13898786137751573698999955865765862999869995799745899578999989999987307998825998
Q ss_pred EEECCEEEEEEECCC
Q ss_conf 345370999710566
Q gi|254780246|r 162 IRYSGEVIIRKEGKK 176 (177)
Q Consensus 162 I~~~~e~I~~KegKk 176 (177)
|||+||+|+||||||
T Consensus 161 I~~~~e~i~~K~gKk 175 (177)
T 1rl6_A 161 IRYEGELVRLKEGKT 175 (177)
T ss_dssp EEETTCCCCC-----
T ss_pred CCCCCEEEEECCCCC
T ss_conf 668784999737556
No 4
>2j01_H 50S ribosomal protein L6; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=0 Score=438.71 Aligned_cols=176 Identities=46% Similarity=0.763 Sum_probs=174.3
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC
Q ss_conf 97444645107997589997998999906946999826863999707589985055432201338887521125897511
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT 80 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt 80 (177)
||||||+||.||++|+|+++++.|+|+||+|+|++.+++.+.+..+++.+.+.++.++++++|+|||+||||+|||+||+
T Consensus 1 MSrIgk~pI~IP~gV~v~i~~~~i~vkGp~G~l~~~~~~~i~~~~~~~~i~v~~~~~~k~~ka~~GT~rsli~NmI~GVs 80 (180)
T 2j01_H 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVS 80 (180)
T ss_dssp -----------CTTCEEEECSSCEEEECSSCCEECCCCSSSCCCCCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEEEEECCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 98355676105999899995999999969988999971375577637517998566414689999999998616899996
Q ss_pred EEEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 00377787404763012204249999515676552588503899769988999957998987999874100747985787
Q gi|254780246|r 81 KGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGK 160 (177)
Q Consensus 81 ~Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK 160 (177)
+||+++|+++|+|||++++++.|.|+|||||++.+.||+|++++++++|+|+|+|+|||.||||||+||++|+|||||||
T Consensus 81 ~Gf~~~L~lvGvgyr~~~~~~~l~l~lG~sh~i~~~iP~gv~v~~~~~t~I~i~G~dKe~Vgq~AA~Ir~~r~pepYkgk 160 (180)
T 2j01_H 81 EGYSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEK 160 (180)
T ss_dssp TCCCCEECCCSSSCEECCBTTBEEEECSSSSCEEECCCTTEEEECSSSSCEEEEESCSTTTTHHHHHHHTTSCSCSSSSS
T ss_pred CCEEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 37099999950440432348467777335564587689985688558998999507799999999998741799995799
Q ss_pred CEEECCEEEEEEECCC
Q ss_conf 4345370999710566
Q gi|254780246|r 161 GIRYSGEVIIRKEGKK 176 (177)
Q Consensus 161 gI~~~~e~I~~KegKk 176 (177)
||+|+||+|++|||||
T Consensus 161 GI~~~~e~I~~K~gKk 176 (180)
T 2j01_H 161 GIYYAGEPVRLKPGKA 176 (180)
T ss_dssp SCCCSSCCCC------
T ss_pred CEEECCEEEEECCCCC
T ss_conf 8888783999817665
No 5
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=0 Score=434.44 Aligned_cols=176 Identities=45% Similarity=0.748 Sum_probs=174.2
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECC
Q ss_conf 97444645107997589997998999906946999826863999707589985055432201338887521125897511
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVT 80 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt 80 (177)
||||||+||.||++|+|+++++.|+|+||+|+|++.+++.+.+.++++++.+.++.++++++|||||+||||+|||+||+
T Consensus 1 MSrigk~pI~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~kal~gt~rs~i~Nmi~GVs 80 (185)
T 2zjr_E 1 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVS 80 (185)
T ss_dssp ----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCSSSCCBCCSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEECCCCCEEEEECCEEEEECCCEEEEEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHCEEEEEC
T ss_conf 97245675207999889997999999929834998779974899637614898503114567777779987615448875
Q ss_pred EEEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 00377787404763012204249999515676552588503899769988999957998987999874100747985787
Q gi|254780246|r 81 KGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGK 160 (177)
Q Consensus 81 ~Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGK 160 (177)
+||+++|+++|+|||++++++.|.|+|||||++.+.||++|+++++++|+|+|+|+|||+||||||+||++|+|||||||
T Consensus 81 ~Gf~~~L~lvgvgf~~~v~~~~l~l~LG~Sh~i~~~iP~~v~v~~~k~t~I~i~G~dke~Vgq~Aa~Ir~~r~pepYKGK 160 (185)
T 2zjr_E 81 DGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGK 160 (185)
T ss_dssp HCEEEEEECBSTTCCCCCBTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCC
T ss_pred CCCEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 00589999988776230157376677512044465189975899568999999978999999999998624899896898
Q ss_pred CEEECCEEEEEEECCC
Q ss_conf 4345370999710566
Q gi|254780246|r 161 GIRYSGEVIIRKEGKK 176 (177)
Q Consensus 161 gI~~~~e~I~~KegKk 176 (177)
||||+||||.+|||||
T Consensus 161 Gi~~~ge~I~~K~gKk 176 (185)
T 2zjr_E 161 GVRFVGEQIALKAGKA 176 (185)
T ss_dssp BCCCSSCCCCCCCCC-
T ss_pred CCCCCCEEEEEECCCC
T ss_conf 7279798999807544
No 6
>3ofq_G 50S ribosomal protein L6; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=0 Score=437.26 Aligned_cols=176 Identities=41% Similarity=0.709 Sum_probs=174.6
Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCE
Q ss_conf 74446451079975899979989999069469998268639997075899850554322013388875211258975110
Q gi|254780246|r 2 SRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTK 81 (177)
Q Consensus 2 SrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~ 81 (177)
|||||+||.||++|+|+++++.++|+||+|+|++.++++++++++++.+.+++++++++++|+|||+||||+|||+||++
T Consensus 1 SrIgk~pI~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~i~i~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~ 80 (176)
T 3ofq_G 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE 80 (176)
T ss_dssp CCSTTCCCCCCSSCCCEECSSEEEECCSSCSCEEEECSSCCCCCTTTCCCCCCCTTCSSCSHHHHHHHHHHHHHHTSSSS
T ss_pred CCCCCCCCCCCCCCEEEEECCEEEEECCCEEEEEEEECCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97566670159998999979999999499179999505689998698359983866305689999999999977553205
Q ss_pred EEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 03777874047630122042499995156765525885038997699889999579989879998741007479857874
Q gi|254780246|r 82 GYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKG 161 (177)
Q Consensus 82 Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKg 161 (177)
||+++|+++|+||||+++|+.|.|+|||||++.+.+|++++++++++|+|+|+|+|||+||||||+||++|+||||||||
T Consensus 81 Gf~~~L~lvGvgyr~~v~g~~l~l~lG~sh~i~~~iP~~I~v~~~~~t~I~i~G~dKe~Vgq~AA~Ir~~r~pepYKGKG 160 (176)
T 3ofq_G 81 GFTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKG 160 (176)
T ss_dssp CBCCCCCCCSSSCCCCCBTTBCCCCSSSSSCCCCCCCTTCCBCCSSSSCCCBCBSCHHHHTHHHHHHHTTTCCCTTTCCS
T ss_pred CEEEEEEEEEEEEEEEECCCCCEEEECCCCCEEEECCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 62999999763278896155314673134643320899709998689789999768999999999986047998958986
Q ss_pred EEECCEEEEEEECCCC
Q ss_conf 3453709997105669
Q gi|254780246|r 162 IRYSGEVIIRKEGKKK 177 (177)
Q Consensus 162 I~~~~e~I~~KegKkK 177 (177)
|||+||+|++||||||
T Consensus 161 I~~~~e~I~~K~gKkK 176 (176)
T 3ofq_G 161 VRYADEVVRTKEAKKK 176 (176)
T ss_dssp CCCSSCCCCCCCCCCC
T ss_pred CCCCCEEEEECCCCCC
T ss_conf 3687809997166689
No 7
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=0 Score=372.38 Aligned_cols=169 Identities=25% Similarity=0.383 Sum_probs=158.3
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEEC
Q ss_conf 97444645107997589997998999906946999826-86399970758998505543220133888752112589751
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGV 79 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GV 79 (177)
|||+ ||.||++|+|+++++.++|+||+|+|+++++ +.++++++++.+.+++++++++++|+|||+||||+|||+||
T Consensus 1 MsRi---~I~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~~i~i~~~~~~i~v~~~~~~k~~~a~~Gt~rslI~NmI~GV 77 (178)
T 1vq8_E 1 MPRV---ELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGV 77 (178)
T ss_dssp -CEE---EEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC---CEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCEEEEE
T ss_conf 9856---6457999689997999999868959999932883899983998999427752889999999999874325400
Q ss_pred CEEEEEEEEEECCCCE--EEECCCEEEEE--ECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 1003777874047630--12204249999--5156765525885038997699889999579989879998741007479
Q gi|254780246|r 80 TKGYERKLEISGVGCR--AFMDGRNLKMS--LGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAE 155 (177)
Q Consensus 80 t~Gf~~~L~lvgvgy~--v~~~g~~l~l~--LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pe 155 (177)
++||+++|+++|+||+ ++.+|+.|.|. ||||||+.++||++++++++ +|+|+|+|+|||.||||||+||++||
T Consensus 78 t~Gf~k~LelvgvG~~~~~~~~g~~l~l~~~lG~shpi~~~ip~~v~v~~~-~~~I~i~G~DKq~Vgq~AA~Ir~~r~-- 154 (178)
T 1vq8_E 78 TEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEID-GEELTVSGPDIEAVGQTAADIEQLTR-- 154 (178)
T ss_dssp HTCEEEEEEEECSSSCCEEEEETTEEEEESGGGCSSCEEEECCTTCEEEEE-TTEEEEEESCHHHHHHHHHHHHHTTC--
T ss_pred CCCEEEEEEEEEEECCEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEC-CCEEEEEECCHHHHHHHHHHHHCCCC--
T ss_conf 561588899999702138861596699998405311056617898089974-88899996898997299999734688--
Q ss_pred CCCCCCE--EECCEEEEEEECCC
Q ss_conf 8578743--45370999710566
Q gi|254780246|r 156 PYKGKGI--RYSGEVIIRKEGKK 176 (177)
Q Consensus 156 pYKGKgI--~~~~e~I~~KegKk 176 (177)
|||||+ |||||||+|||||.
T Consensus 155 -ykgKgir~~~dge~I~rK~gK~ 176 (178)
T 1vq8_E 155 -INDKDVRVFQDGVYITRKPNRG 176 (178)
T ss_dssp -CSSSCTTTCCCEEEEEECC---
T ss_pred -CCCCCCEEEECCEEEEECCCCC
T ss_conf -9999602853788999878877
No 8
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=0 Score=362.56 Aligned_cols=171 Identities=23% Similarity=0.326 Sum_probs=156.2
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEE---ECCEEEEEECCCCCCCHHHHHHHHHEEEEEE
Q ss_conf 97444645107997589997998999906946999826-8639997---0758998505543220133888752112589
Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTL---QEGMLSVATINGSKKARAAWGMSRTMINNLF 76 (177)
Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~---~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi 76 (177)
||+++++||.||++|+|+++++.++|+||+|+|++.|+ +.+++.. +++.+.+.++.++++++|+|||+||||+|||
T Consensus 2 ~~i~~~~pI~IP~gV~v~i~~~~v~vkGpkG~L~~~~~~~~v~~~~~~~~~~~i~v~~~~~~k~~ka~~Gt~rslI~Nmi 81 (192)
T 2zkr_e 2 KTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMI 81 (192)
T ss_dssp --------CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEETTTTCEEEEECSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHCEE
T ss_conf 72015986877999899998999999959918999965887899998356887999348777767654565898874101
Q ss_pred EECCEEEEEEEEEECCCCEEEE----CCCEEEEE--ECCCCCCCCCCCCEEEE--EECCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 7511003777874047630122----04249999--51567655258850389--9769988999957998987999874
Q gi|254780246|r 77 HGVTKGYERKLEISGVGCRAFM----DGRNLKMS--LGFSHDVLYTPLEGISI--FVSKPTEIIVSGIDKQKVGHVAAEI 148 (177)
Q Consensus 77 ~GVt~Gf~~~L~lvgvgy~v~~----~g~~l~l~--LG~sh~i~~~ip~~v~v--~~~k~~~I~i~G~dke~Vgq~AA~I 148 (177)
+|||+||+++|+++|+||||++ +|+.|.++ |||||++.+++|.++.+ +++++|+|+|+|+|||.||||||+|
T Consensus 82 ~GVt~Gf~k~LelvGVGyra~v~~~~~g~~l~~~l~lg~~~~~~v~ip~~~~v~v~~~~~t~I~i~GiDKq~Vgq~AA~I 161 (192)
T 2zkr_e 82 KGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALI 161 (192)
T ss_dssp HHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHHHHHHHHH
T ss_pred EEECCCEEEEEEEEEECCEEEEEEECCCCEEEEEEEECCCEEEEECCCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHC
T ss_conf 53037699999998751305898706883899986743205687447788127984288978999706699986999865
Q ss_pred HCCCCCCCCCCCCEE--ECCEEEEEEEC
Q ss_conf 100747985787434--53709997105
Q gi|254780246|r 149 RSYRSAEPYKGKGIR--YSGEVIIRKEG 174 (177)
Q Consensus 149 r~~r~pepYKGKgI~--~~~e~I~~Keg 174 (177)
|+|||||||||| +|||||++|+-
T Consensus 162 ---r~pepyKGKGiR~f~dG~yi~~Kg~ 186 (192)
T 2zkr_e 162 ---QQATTVKNKDIRKFLDGIYVSEKGT 186 (192)
T ss_dssp ---HHHTCCSSSCTTTCCCEEEEEEC--
T ss_pred ---CCCCCCCCCCCCEEECCEEEEEEEE
T ss_conf ---8998537998627005679998665
No 9
>3jyw_H 60S ribosomal protein L9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_H
Probab=100.00 E-value=0 Score=353.76 Aligned_cols=165 Identities=25% Similarity=0.382 Sum_probs=151.3
Q ss_pred CCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECC-CEEE-EEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCEE
Q ss_conf 46451079975899979989999069469998268-6399-970758998505543220133888752112589751100
Q gi|254780246|r 5 GKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSD-GISV-TLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTKG 82 (177)
Q Consensus 5 gk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~-~v~i-~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~G 82 (177)
.++||+||++|+|+++++.++|+||+|+|+++|++ .+.+ ..+++.+.+.+++++++++|+|||+||||+|||+||++|
T Consensus 1 tk~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~~~~~~~~~~~~i~~~~~~~~kk~~a~~gt~rsli~NmI~GVt~G 80 (179)
T 3jyw_H 1 TEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKG 80 (179)
T ss_dssp CEEEECCCTTCEEEEETTEEEEECSSCEEEEECCCSSCBCCCEETTEEEEECSCCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEECCCCCEEEEECCEEEEECCCEEEEEEECCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCEEEEECCC
T ss_conf 99503779998999979999998789899999469856899938988999837986778999999998762228745575
Q ss_pred EEEEEEEECCCCEEEEC--------CCEEEEEECCCCCCCCCCCCEEEEEE--CCCCEEEEEECCHHHHHHHHHHHHCCC
Q ss_conf 37778740476301220--------42499995156765525885038997--699889999579989879998741007
Q gi|254780246|r 83 YERKLEISGVGCRAFMD--------GRNLKMSLGFSHDVLYTPLEGISIFV--SKPTEIIVSGIDKQKVGHVAAEIRSYR 152 (177)
Q Consensus 83 f~~~L~lvgvgy~v~~~--------g~~l~l~LG~sh~i~~~ip~~v~v~~--~k~~~I~i~G~dke~Vgq~AA~Ir~~r 152 (177)
|+++|+++|+||||+++ ++.|.++||||||+.++||++|++++ +++|+|+|+|+|||.||||||+| |
T Consensus 81 f~~~L~lvGvGyr~~v~~~~~~~~~~~~l~~~lG~sh~~~~~ip~gv~v~v~~~~~t~I~i~G~dke~Vgq~AA~I---r 157 (179)
T 3jyw_H 81 YKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADL---Q 157 (179)
T ss_dssp CCCEEEEECSSSCCEEECTTTTCSSEEEEESSTTCSSCEEEECCSSBCCEECSSSCSEEECCBSCSHHHHHHHHHH---H
T ss_pred EEEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCHHHHHHHHHHC---C
T ss_conf 5999999887578898762356776248998305640288458998489976799989999968999986999864---7
Q ss_pred CCCCCCCCCE--EECCEEEEEE
Q ss_conf 4798578743--4537099971
Q gi|254780246|r 153 SAEPYKGKGI--RYSGEVIIRK 172 (177)
Q Consensus 153 ~pepYKGKgI--~~~~e~I~~K 172 (177)
+||||||||| |||||||.+|
T Consensus 158 ~~~pyKgKgiR~f~dG~yi~~K 179 (179)
T 3jyw_H 158 QICRVRNKDIRKFLDGIYVSHK 179 (179)
T ss_dssp HTTCSCSSCTTTCCCEEEEEEC
T ss_pred CCCCCCCCCCCEEECCEEEEEC
T ss_conf 9963479985470167899839
No 10
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=99.92 E-value=7.4e-26 Score=169.14 Aligned_cols=86 Identities=26% Similarity=0.431 Sum_probs=79.0
Q ss_pred CCCC-CCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEE---ECCEEEEEECCCCCCCHHHHHHHHHEEEEE
Q ss_conf 9744-4645107997589997998999906946999826-8639997---075899850554322013388875211258
Q gi|254780246|r 1 MSRI-GKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTL---QEGMLSVATINGSKKARAAWGMSRTMINNL 75 (177)
Q Consensus 1 MSrI-gk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~---~~~~i~i~~~~~~k~~ka~~GT~rsli~Nm 75 (177)
|+|| +++||.||++|+|+++++.|+|+||+|+|++.|+ +.+++.. +++.+.+.++.++++++|+|||+||||+||
T Consensus 8 M~~i~~~~~I~IP~gV~V~i~~~~i~VkGpkG~Ls~~~~~~~v~~~~~~~~~~~i~v~~~~~~k~~~a~~GT~rslI~Nm 87 (100)
T 2cql_A 8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNM 87 (100)
T ss_dssp CCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSSSCEEEEECCSSSTHHHHHHHHHHHHHHHH
T ss_pred CCEECCCCCEECCCCCEEEEECCEEEEECCCCEEEEEECCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 36762798377699979999699999992994699992368467899604556899951787488999988899999864
Q ss_pred EEECCEEEEEE
Q ss_conf 97511003777
Q gi|254780246|r 76 FHGVTKGYERK 86 (177)
Q Consensus 76 i~GVt~Gf~~~ 86 (177)
|.|||+||.+.
T Consensus 88 I~GVt~G~~ks 98 (100)
T 2cql_A 88 IKGVTLGSGPS 98 (100)
T ss_dssp HHHHHTSCCSC
T ss_pred EEEEECCEECC
T ss_conf 06310745068
No 11
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=90.75 E-value=0.79 Score=23.62 Aligned_cols=139 Identities=10% Similarity=0.211 Sum_probs=73.8
Q ss_pred CCCCCEEEEECCEEEEEECCCE----------EEE--EECCC-----EEEEE-ECCEEEEEECCCCCCCHHHH-HHHHHE
Q ss_conf 7997589997998999906946----------999--82686-----39997-07589985055432201338-887521
Q gi|254780246|r 11 VPLGVDVAVEDHEIKVKGPKGQ----------LSF--MMSDG-----ISVTL-QEGMLSVATINGSKKARAAW-GMSRTM 71 (177)
Q Consensus 11 IP~~V~v~i~~~~i~vkGp~G~----------l~~--~~~~~-----v~i~~-~~~~i~i~~~~~~k~~ka~~-GT~rsl 71 (177)
=|++|+|+++++.|+|+|..-. .++ .++.. +.... ++|.+.+.........+++- ....++
T Consensus 124 ~pEDI~V~v~~~~L~I~g~r~~~~~~~~~~r~F~R~~~LP~~VD~~~i~A~l~~dGvL~I~~PK~~pe~~~i~~~~~~~~ 203 (314)
T 2bol_A 124 KAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGL 203 (314)
T ss_dssp CTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSSEEEEEEEBSSCCTTTEEEETTTEE
T ss_pred CHHHCEEEEECCEEEEEEEEEEECCCCEEEEEEEEEEECCCCCCHHHEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 76783999999999999999654689889999999998987558558699976896699997888876543244457765
Q ss_pred EEEEEEECCEEEEEEEEEECCCCEEEE----CCCEEEEEE----CCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHH--
Q ss_conf 125897511003777874047630122----042499995----1567655258850389976998899995799898--
Q gi|254780246|r 72 INNLFHGVTKGYERKLEISGVGCRAFM----DGRNLKMSL----GFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKV-- 141 (177)
Q Consensus 72 i~Nmi~GVt~Gf~~~L~lvgvgy~v~~----~g~~l~l~L----G~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~V-- 141 (177)
. .-=...+.+.|.+.|..-.-.+ .|..+.+.+ ||+ |++++|.+.. +.|+|+|--++.-
T Consensus 204 ~----~~Pks~~~~~l~~kg~~~~~~v~~~d~g~k~hlev~vdPGfk-------~EDI~V~v~~-n~L~IsGe~k~e~~~ 271 (314)
T 2bol_A 204 A----IQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFA-------PKDVKVWAKG-NKVYVHGVTGKEEKT 271 (314)
T ss_dssp E----ECCBCCSSCCSCCCSCCEEEEEECTTSCEEEEEEEECCTTCC-------GGGEEEEESS-SEEEEEEEEC-----
T ss_pred C----CCCCCHHHCEECCCCCCCCCEEECCCCCEEEEEEEECCCCCC-------HHHCEEEEEC-CEEEEEEEECCCCCC
T ss_conf 6----586543220100058888754332579768999994299977-------7990999999-999999998432445
Q ss_pred --HH---HHHHHHCCCCCCCCCCCC
Q ss_conf --79---998741007479857874
Q gi|254780246|r 142 --GH---VAAEIRSYRSAEPYKGKG 161 (177)
Q Consensus 142 --gq---~AA~Ir~~r~pepYKGKg 161 (177)
++ ....-|++.-|+...-..
T Consensus 272 ~~~~~~~~reF~Rs~~LP~~VD~~~ 296 (314)
T 2bol_A 272 ENASHSEHREFYKAFVTPEVVDASK 296 (314)
T ss_dssp -------CEEEEEEEECSSEECGGG
T ss_pred CCCCEEEEEEEEEEEECCCCCCHHH
T ss_conf 7766899999999988988737403
No 12
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=67.74 E-value=6 Score=18.50 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=45.4
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHEEE--EEEEECC-EEEEEEEEEECCCCEEEECCCEEEEEECCCCCC-CCCCCCEEE
Q ss_conf 758998505543220133888752112--5897511-003777874047630122042499995156765-525885038
Q gi|254780246|r 47 EGMLSVATINGSKKARAAWGMSRTMIN--NLFHGVT-KGYERKLEISGVGCRAFMDGRNLKMSLGFSHDV-LYTPLEGIS 122 (177)
Q Consensus 47 ~~~i~i~~~~~~k~~ka~~GT~rsli~--Nmi~GVt-~Gf~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i-~~~ip~~v~ 122 (177)
++.+.+.............|++.|++. ..+.||+ +|+.|.|+=. .+..|.+-.+ +.-+.+.+.
T Consensus 133 ~~~i~~l~~g~~~~~~~~~~~~iSl~pl~~~~~~vt~~Glky~L~~~-------------~l~~~~~~g~SNe~~~~~~~ 199 (222)
T 3lm8_A 133 QNHIQMFPPGEYDIEKDENKRYISFIPFSEDIHELTLTGFKYPLNNC-------------HITLGSTLCISNELIHSRGT 199 (222)
T ss_dssp TEEEEEECSEEEEEECCSSCCEEEEEECSSCEEEEEEESBSSCEEEE-------------EECTTCCTTSSBCBSSSEEE
T ss_pred CCEEEEEECCCEEEEECCCCCEEEEEECCCCCCEEEECCCEEECCCC-------------EEECCCCEEEEEEEECCEEE
T ss_conf 94999992896699805898579999846872259935989777992-------------76279950783799898499
Q ss_pred EEECCCCEEEEEECCHHHH
Q ss_conf 9976998899995799898
Q gi|254780246|r 123 IFVSKPTEIIVSGIDKQKV 141 (177)
Q Consensus 123 v~~~k~~~I~i~G~dke~V 141 (177)
+++.++..+++.+.|.|.-
T Consensus 200 I~~~~G~llvi~s~D~~~~ 218 (222)
T 3lm8_A 200 FSFVKGILIMIRSTDLEHH 218 (222)
T ss_dssp EEESBSCEEEEEECCC---
T ss_pred EEECCCEEEEEEEECCCCC
T ss_conf 9987898999992647644
No 13
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative; 2.10A {Geobacillus thermodenitrificans ng80-2}
Probab=32.43 E-value=24 Score=15.03 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=49.1
Q ss_pred CEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEE--EEEEECC-EEEEEEEEEECCCCEEEECCCEEEE--EECCCCCCC
Q ss_conf 6399970758998505543220133888752112--5897511-0037778740476301220424999--951567655
Q gi|254780246|r 40 GISVTLQEGMLSVATINGSKKARAAWGMSRTMIN--NLFHGVT-KGYERKLEISGVGCRAFMDGRNLKM--SLGFSHDVL 114 (177)
Q Consensus 40 ~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~--Nmi~GVt-~Gf~~~L~lvgvgy~v~~~g~~l~l--~LG~sh~i~ 114 (177)
.+.+..+++.+.+.............|++.|++- .-+.||| +|+.|.|+ +..|.+ .+|-|.-
T Consensus 123 ~i~i~~~~~~~~~~~~g~~~~~~~~~g~~iSlipl~~~~~~vt~~Glky~L~-----------~~~l~~~~~~giSN~-- 189 (223)
T 3k94_A 123 PIEIVDRQNVLTVHLPGTYTVMYDARYCYVSYIPVSETVAEFTLTGFKYPLT-----------NCHISRGSTLCISNE-- 189 (223)
T ss_dssp CEEEEETTEEEEEECSEEEEEECCTTCCEEEEEECSSEEEEEEEESBSSCCC-----------SEEEETTTSCCBCCC--
T ss_pred CEEEEECCCEEEEECCCCEEEEECCCCCEEEECCCCCCCCEEEECCCEEECC-----------CCEECCCCCCEEEEE--
T ss_conf 3999955988999879977997068752588624778713499369798789-----------968528997268579--
Q ss_pred CCCCCEEEEEECCCCEEEEEECCHH
Q ss_conf 2588503899769988999957998
Q gi|254780246|r 115 YTPLEGISIFVSKPTEIIVSGIDKQ 139 (177)
Q Consensus 115 ~~ip~~v~v~~~k~~~I~i~G~dke 139 (177)
-.-+.+++++..+..+++.+.|+-
T Consensus 190 -~~~~~v~Is~~~G~llvi~s~D~~ 213 (223)
T 3k94_A 190 -LIQSSGTFSFSEGILMMIRSSDSS 213 (223)
T ss_dssp -BCSSEEEEEESBSCEEEEEECCTT
T ss_pred -EECCEEEEEECCCEEEEEEEECHH
T ss_conf -989849999888989999982430
No 14
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=28.70 E-value=21 Score=15.30 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=15.9
Q ss_pred CCCEEEEECCEEEEEECCCEEEE
Q ss_conf 97589997998999906946999
Q gi|254780246|r 13 LGVDVAVEDHEIKVKGPKGQLSF 35 (177)
Q Consensus 13 ~~V~v~i~~~~i~vkGp~G~l~~ 35 (177)
.||.+.+++..+.+++|.|.++-
T Consensus 17 ~GI~L~~e~~kLr~~ap~g~lt~ 39 (78)
T 2jug_A 17 LGVRLWVEGERLRFQAPPGVMTP 39 (78)
T ss_dssp HTCEEEEETTEEEEECCTTTTCH
T ss_pred CCCEEEEECCEEEEECCCCCCCH
T ss_conf 89889998999999678777999
No 15
>2wj7_A Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein, disease mutation, eye lens protein, methylation, polymorphism, glycoprotein; 2.63A {Homo sapiens} PDB: 3l1g_A
Probab=28.48 E-value=27 Score=14.67 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=12.9
Q ss_pred CCEEEEEECCEEEEEECCC
Q ss_conf 8639997075899850554
Q gi|254780246|r 39 DGISVTLQEGMLSVATING 57 (177)
Q Consensus 39 ~~v~i~~~~~~i~i~~~~~ 57 (177)
..+.+..+++.+.++....
T Consensus 24 edi~V~~~~~~l~I~g~~~ 42 (94)
T 2wj7_A 24 EELKVKVLGDVIEVHGKHE 42 (94)
T ss_dssp GGEEEEEETTEEEEEEEEC
T ss_pred HHEEEEEECCEEEEEEEEE
T ss_conf 9969999899799999951
No 16
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens}
Probab=27.17 E-value=29 Score=14.49 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=5.7
Q ss_pred EEEEEECCEEEEEE
Q ss_conf 39997075899850
Q gi|254780246|r 41 ISVTLQEGMLSVAT 54 (177)
Q Consensus 41 v~i~~~~~~i~i~~ 54 (177)
|.|+.+++.+.|+.
T Consensus 89 i~v~~~~~~L~I~g 102 (175)
T 2klr_A 89 LKVKVLGDVIEVHG 102 (175)
T ss_dssp EEEEEETTEEEEEE
T ss_pred CEEEEECCEEEEEE
T ss_conf 38999799999997
No 17
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=22.27 E-value=37 Score=13.94 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=11.8
Q ss_pred CEEEEEECCEEEEEECCC
Q ss_conf 639997075899850554
Q gi|254780246|r 40 GISVTLQEGMLSVATING 57 (177)
Q Consensus 40 ~v~i~~~~~~i~i~~~~~ 57 (177)
.+++..+++.+.++....
T Consensus 26 dI~V~v~~~~L~I~g~~~ 43 (101)
T 2wj5_A 26 EISVKVVGDHVEVHARHE 43 (101)
T ss_dssp GEEEEEETTEEEEEEEEE
T ss_pred HEEEEEECCEEEEEEEEE
T ss_conf 959999899899998500
Done!