Query gi|254780246|ref|YP_003064659.1| 50S ribosomal protein L6 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 177 No_of_seqs 130 out of 2146 Neff 6.6 Searched_HMMs 13730 Date Tue May 24 05:01:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780246.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2qamg2 d.141.1.1 (G:82-176) R 100.0 1.1E-40 8.4E-45 253.9 2.1 95 83-177 1-95 (95) 2 d2zjre1 d.141.1.1 (E:83-172) R 100.0 2.7E-37 2E-41 234.3 6.2 90 83-172 1-90 (90) 3 d1rl6a2 d.141.1.1 (A:82-170) R 100.0 2.9E-36 2.1E-40 228.3 9.2 89 83-171 1-89 (89) 4 d2j01h2 d.141.1.1 (H:83-171) R 100.0 9.1E-37 6.7E-41 231.2 5.1 89 83-171 1-89 (89) 5 d2qamg1 d.141.1.1 (G:1-81) Rib 99.9 1.2E-27 9.1E-32 178.1 -1.1 81 2-82 1-81 (81) 6 d2cqla1 d.141.1.1 (A:1-87) Rib 99.9 2.3E-24 1.7E-28 159.1 5.3 82 1-82 2-87 (87) 7 d1rl6a1 d.141.1.1 (A:7-81) Rib 99.9 4.9E-24 3.6E-28 157.2 4.9 75 8-82 1-75 (75) 8 d2zjre2 d.141.1.1 (E:5-82) Rib 99.9 2.7E-25 1.9E-29 164.5 -4.4 78 5-82 1-78 (78) 9 d1vqoe1 d.141.1.1 (E:1-79) Rib 99.9 1.9E-23 1.4E-27 153.8 4.8 77 6-82 2-79 (79) 10 d1vqoe2 d.141.1.1 (E:80-172) R 99.8 7E-20 5.1E-24 133.0 10.0 87 83-173 1-93 (93) 11 d2j01h1 d.141.1.1 (H:12-82) Ri 99.8 9.9E-22 7.2E-26 143.8 -1.9 71 12-82 1-71 (71) No 1 >d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=1.1e-40 Score=253.87 Aligned_cols=95 Identities=49% Similarity=0.816 Sum_probs=93.9 Q ss_pred EEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE Q ss_conf 37778740476301220424999951567655258850389976998899995799898799987410074798578743 Q gi|254780246|r 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGI 162 (177) Q Consensus 83 f~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKgI 162 (177) |+++|+++|+||||+++|+.|.|+|||||++.+.+|++++++++++|.|+|+|+|||.||||||+||++|+||||||||| T Consensus 1 f~k~L~lvGVGYRa~~~g~~L~l~LGySH~i~~~iP~gI~v~~~~~t~i~i~g~dKq~vg~~Aa~Ir~~r~pepYKGKGI 80 (95) T d2qamg2 1 FTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGV 80 (95) T ss_dssp CCCCCCBCSSSCCCCCCTTEECCCSSSSSCCCEECCSSEECCCSSTTCCCCEESCHHHHHHHHHHHHTTTCCCTTSCCSB T ss_pred CEEEEEEEEEEEEEEECCCEEEEEEECCEECEECCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE T ss_conf 95899999689999976998999981320010419988479706887899998289999899999861589989689757 Q ss_pred EECCEEEEEEECCCC Q ss_conf 453709997105669 Q gi|254780246|r 163 RYSGEVIIRKEGKKK 177 (177) Q Consensus 163 ~~~~e~I~~KegKkK 177 (177) +|+||+|.||||||| T Consensus 81 ~y~~E~i~~K~gKkK 95 (95) T d2qamg2 81 RYADEVVRTKEAKKK 95 (95) T ss_dssp CCTTCCCCCCCCCCC T ss_pred EECCEEEEECCCCCC T ss_conf 698819993164679 No 2 >d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Probab=100.00 E-value=2.7e-37 Score=234.26 Aligned_cols=90 Identities=49% Similarity=0.836 Sum_probs=88.9 Q ss_pred EEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE Q ss_conf 37778740476301220424999951567655258850389976998899995799898799987410074798578743 Q gi|254780246|r 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGI 162 (177) Q Consensus 83 f~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKgI 162 (177) |+++|+++|+||||+++|+.|.|+|||||++.+.+|++++++++++|.|+|+|+|||.||||||.||++|+||||||||| T Consensus 1 f~k~L~lvGVGYra~~~g~~L~l~LG~SH~i~~~iP~~I~v~~~~~t~i~i~g~dKq~vg~~aa~Ir~~r~pepYKGKGI 80 (90) T d2zjre1 1 YTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGV 80 (90) T ss_dssp EEEEEECBSTTCCCCCBTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCCBC T ss_pred CEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCE T ss_conf 97999999999999966998999996014012615787079845887899998699999999999986479998168887 Q ss_pred EECCEEEEEE Q ss_conf 4537099971 Q gi|254780246|r 163 RYSGEVIIRK 172 (177) Q Consensus 163 ~~~~e~I~~K 172 (177) +|+||+|.|| T Consensus 81 ~y~~E~i~~K 90 (90) T d2zjre1 81 RFVGEQIALK 90 (90) T ss_dssp CCSSCCCCCC T ss_pred EECCEEEECC T ss_conf 5978698729 No 3 >d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Probab=100.00 E-value=2.9e-36 Score=228.31 Aligned_cols=89 Identities=54% Similarity=0.880 Sum_probs=87.3 Q ss_pred EEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE Q ss_conf 37778740476301220424999951567655258850389976998899995799898799987410074798578743 Q gi|254780246|r 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGI 162 (177) Q Consensus 83 f~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKgI 162 (177) |+++|+++|+||||+++|+.|.|+|||||++.+.+|++++++++++|.|+|+|+|||.||||||.||++|+||||||||| T Consensus 1 f~k~L~lvGVGYra~~~g~~L~l~LGySH~I~~~iP~~i~v~~~~~t~i~i~g~dKq~vg~~aa~Ir~~r~pepYKGKGI 80 (89) T d1rl6a2 1 YEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGI 80 (89) T ss_dssp EEEEEEEESTTCEEEEETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCCEE T ss_pred CEEEEEEEEEEEEEEECCCEEEEEEEECCEEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCE T ss_conf 96899999799999965998999995132478858998699926896458997489999999999860689989488777 Q ss_pred EECCEEEEE Q ss_conf 453709997 Q gi|254780246|r 163 RYSGEVIIR 171 (177) Q Consensus 163 ~~~~e~I~~ 171 (177) +|+||+|++ T Consensus 81 ~y~~E~Irl 89 (89) T d1rl6a2 81 RYEGELVRL 89 (89) T ss_dssp EETTCCCCC T ss_pred EECCEEEEC T ss_conf 698879849 No 4 >d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=9.1e-37 Score=231.19 Aligned_cols=89 Identities=51% Similarity=0.820 Sum_probs=87.2 Q ss_pred EEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE Q ss_conf 37778740476301220424999951567655258850389976998899995799898799987410074798578743 Q gi|254780246|r 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGI 162 (177) Q Consensus 83 f~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKgI 162 (177) |+++|+++|+||||+++|+.|.|+|||||++.+.+|++++++++++|.|+++|+|||.||||||.||++|+||||||||| T Consensus 1 f~k~LelvGVGYra~~~g~~L~l~LGySH~I~~~iP~~I~v~~~~~t~i~i~g~dK~~vg~~aa~IR~~r~pepYKGKGI 80 (89) T d2j01h2 1 YSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEKGI 80 (89) T ss_dssp CCCEECCCSSSCEECCBTTBEEEECSSSSCEEECCCTTEEEECSSSSCEEEEESCSTTTTHHHHHHHTTSCSCSSSSSSC T ss_pred CEEEEEEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE T ss_conf 96999999899999981998999996130012129997699806888899996799999999999860689989588757 Q ss_pred EECCEEEEE Q ss_conf 453709997 Q gi|254780246|r 163 RYSGEVIIR 171 (177) Q Consensus 163 ~~~~e~I~~ 171 (177) +|+||+|++ T Consensus 81 ~y~~E~irL 89 (89) T d2j01h2 81 YYAGEPVRL 89 (89) T ss_dssp CCSSCCCC- T ss_pred EECCEEEEC T ss_conf 598879859 No 5 >d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Probab=99.92 E-value=1.2e-27 Score=178.08 Aligned_cols=81 Identities=32% Similarity=0.582 Sum_probs=79.8 Q ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCE Q ss_conf 74446451079975899979989999069469998268639997075899850554322013388875211258975110 Q gi|254780246|r 2 SRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTK 81 (177) Q Consensus 2 SrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~ 81 (177) |||||+||.||++|+|+++++.++|+||+|+|++.+++.+.++++++.+.+.+++++++++|||||+||||+|||+|||+ T Consensus 1 SRIgk~pI~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~ 80 (81) T d2qamg1 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE 80 (81) T ss_dssp CGGGGCCCCCCSSCCCCCBTTEECCCCSSSCCCCEECCSEEEECSSSSCEEEECSSCTTTTHHHHHHHHHHHHHHHHTTT T ss_pred CCCCCCCCCCCCCCEEEEECCEEEEEECCEEEEEEECCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEC T ss_conf 97666770369997999979999999089889999357748997598899983799756899999999999874064308 Q ss_pred E Q ss_conf 0 Q gi|254780246|r 82 G 82 (177) Q Consensus 82 G 82 (177) | T Consensus 81 G 81 (81) T d2qamg1 81 G 81 (81) T ss_dssp C T ss_pred C T ss_conf 8 No 6 >d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Probab=99.89 E-value=2.3e-24 Score=159.10 Aligned_cols=82 Identities=24% Similarity=0.434 Sum_probs=74.9 Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEE---ECCEEEEEECCCCCCCHHHHHHHHHEEEEEE Q ss_conf 97444645107997589997998999906946999826-8639997---0758998505543220133888752112589 Q gi|254780246|r 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTL---QEGMLSVATINGSKKARAAWGMSRTMINNLF 76 (177) Q Consensus 1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~---~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi 76 (177) ||+++++||.||++|+|+++++.++|+||+|+|++.|+ +.+++.. +++.+.+.++.++++++|+|||+||||+||| T Consensus 2 ~~i~~~~~I~IP~gV~v~i~~~~i~vkGpkG~L~~~~~~~~v~~~~~~~~~~~i~v~~~~~~k~~~a~~GT~rslI~Nmi 81 (87) T d2cqla1 2 KTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMI 81 (87) T ss_dssp CCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSSSCEEEEECCSSSTHHHHHHHHHHHHHHHHH T ss_pred CEEECCCCEECCCCCEEEEECCEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHE T ss_conf 67605885877999799996999999919937999924786107996123347996037877778778787999998621 Q ss_pred EECCEE Q ss_conf 751100 Q gi|254780246|r 77 HGVTKG 82 (177) Q Consensus 77 ~GVt~G 82 (177) +|||+| T Consensus 82 ~GVt~G 87 (87) T d2cqla1 82 KGVTLG 87 (87) T ss_dssp HHHHTS T ss_pred EEEECC T ss_conf 501188 No 7 >d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Probab=99.88 E-value=4.9e-24 Score=157.17 Aligned_cols=75 Identities=33% Similarity=0.665 Sum_probs=73.8 Q ss_pred CCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCEE Q ss_conf 510799758999799899990694699982686399970758998505543220133888752112589751100 Q gi|254780246|r 8 AIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTKG 82 (177) Q Consensus 8 ~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~G 82 (177) ||.||++|+|+++++.++|+||+|+|++.+++.+.++++++.+.+.+++++++++|||||+||||+|||+|||+| T Consensus 1 PI~IP~gV~v~i~~~~i~vkGpkG~L~~~~~~~v~i~~~~~~i~v~~~~~~k~~~al~GT~rsli~Nmi~GVt~G 75 (75) T d1rl6a1 1 PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKG 75 (75) T ss_dssp CEECCTTCEEEEETTEEEEEETTEEEEEECCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred CCCCCCCCEEEEECCEEEEEECCEEEEEECCCCEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHCEEECCC T ss_conf 907899969999799999990987799962676899990745787067996778999999999998741522188 No 8 >d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Probab=99.87 E-value=2.7e-25 Score=164.54 Aligned_cols=78 Identities=38% Similarity=0.618 Sum_probs=76.4 Q ss_pred CCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCEE Q ss_conf 464510799758999799899990694699982686399970758998505543220133888752112589751100 Q gi|254780246|r 5 GKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTKG 82 (177) Q Consensus 5 gk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~G 82 (177) ||+||.||++|+|+++++.++|+||+|+|++.+++.+.++++++.+.+.+++++++++|||||+||||+|||+|||+| T Consensus 1 Gk~pI~IP~~V~v~i~~~~v~vkGpkG~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~GT~rsli~Nmi~GVt~G 78 (78) T d2zjre2 1 GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDG 78 (78) T ss_dssp CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCSSSCCBCCSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHC T ss_pred CCCCEECCCCCEEEEECCEEEEECCCEEEEEEECCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEEECCC T ss_conf 997648599979999799999995898899980661999985988999807988778999999999998740634089 No 9 >d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=99.87 E-value=1.9e-23 Score=153.77 Aligned_cols=77 Identities=25% Similarity=0.474 Sum_probs=74.3 Q ss_pred CCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCEE Q ss_conf 645107997589997998999906946999826-86399970758998505543220133888752112589751100 Q gi|254780246|r 6 KKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTKG 82 (177) Q Consensus 6 k~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~G 82 (177) |.||.||++|+|+++++.++|+||+|+|++.|+ ..+.++.+++.+.+.+++++++++|||||+||||+|||+|||+| T Consensus 2 k~~I~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G 79 (79) T d1vqoe1 2 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEG 79 (79) T ss_dssp EEEEECCSSCEEEEETTEEEEEETTEEEEEECCCTTCEEEECSSEEEEECSCCSHHHHHHHHHHHHHHHHHHHHTTTC T ss_pred CCEEECCCCCEEEEECCEEEEECCCEEEEEECCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHEEEEECC T ss_conf 832577999599996999999949808999956880899980998996467664300566898999998742510088 No 10 >d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=99.81 E-value=7e-20 Score=133.01 Aligned_cols=87 Identities=24% Similarity=0.295 Sum_probs=79.6 Q ss_pred EEEEEEEE--CCCCEEEECCCEEEEE--ECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCC Q ss_conf 37778740--4763012204249999--5156765525885038997699889999579989879998741007479857 Q gi|254780246|r 83 YERKLEIS--GVGCRAFMDGRNLKMS--LGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYK 158 (177) Q Consensus 83 f~~~L~lv--gvgy~v~~~g~~l~l~--LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYK 158 (177) |+|+|+++ |||+.++++|+.+.+. ||+++++.+.+|++|++++. +++|+++|+|+|.|||+||+|++.++. | T Consensus 1 f~Ykmk~vyaHFPi~v~v~g~~v~I~NFlGEK~~R~~~i~~gv~v~v~-~deiiv~G~d~E~V~qtAA~Ieq~t~v---k 76 (93) T d1vqoe2 1 WEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEID-GEELTVSGPDIEAVGQTAADIEQLTRI---N 76 (93) T ss_dssp EEEEEEEECSSSCCEEEEETTEEEEESGGGCSSCEEEECCTTCEEEEE-TTEEEEEESCHHHHHHHHHHHHHTTCC---S T ss_pred CEEEEEEEEEECCEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEC-CCEEEEECCCHHHHHHHHHHHHHHHCC---C T ss_conf 989999999748839998288899983267745179996699806772-888999757899987889988775353---7 Q ss_pred CCCE--EECCEEEEEEE Q ss_conf 8743--45370999710 Q gi|254780246|r 159 GKGI--RYSGEVIIRKE 173 (177) Q Consensus 159 GKgI--~~~~e~I~~Ke 173 (177) +||+ |+||+||..|. T Consensus 77 ~kD~R~FlDGIYv~eKp 93 (93) T d1vqoe2 77 DKDVRVFQDGVYITRKP 93 (93) T ss_dssp SSCTTTCCCEEEEEECC T ss_pred CCCCCEEECCEEEEECC T ss_conf 99765833488997359 No 11 >d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Probab=99.79 E-value=9.9e-22 Score=143.76 Aligned_cols=71 Identities=37% Similarity=0.667 Sum_probs=69.6 Q ss_pred CCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCEE Q ss_conf 99758999799899990694699982686399970758998505543220133888752112589751100 Q gi|254780246|r 12 PLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTKG 82 (177) Q Consensus 12 P~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~G 82 (177) |++|+|+++++.|+|+||+|+|++.+++.+.+.++++.+.+.+++++++++|||||+||||+|||+|||+| T Consensus 1 P~gV~v~i~~~~v~vkGpkG~l~~~~~~~i~i~~~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G 71 (71) T d2j01h1 1 PKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEG 71 (71) T ss_dssp CTTCEEEECSSCEEEECSSCCEECCCCSSSCCCCCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred CCCEEEEEECCEEEEECCCEEEEEECCCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEECCC T ss_conf 99669999799999997897899981685699992988999856998488999999999998751543088 Done!