Query         gi|254780246|ref|YP_003064659.1| 50S ribosomal protein L6 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 177
No_of_seqs    130 out of 2146
Neff          6.6 
Searched_HMMs 13730
Date          Tue May 24 05:01:49 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780246.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2qamg2 d.141.1.1 (G:82-176) R 100.0 1.1E-40 8.4E-45  253.9   2.1   95   83-177     1-95  (95)
  2 d2zjre1 d.141.1.1 (E:83-172) R 100.0 2.7E-37   2E-41  234.3   6.2   90   83-172     1-90  (90)
  3 d1rl6a2 d.141.1.1 (A:82-170) R 100.0 2.9E-36 2.1E-40  228.3   9.2   89   83-171     1-89  (89)
  4 d2j01h2 d.141.1.1 (H:83-171) R 100.0 9.1E-37 6.7E-41  231.2   5.1   89   83-171     1-89  (89)
  5 d2qamg1 d.141.1.1 (G:1-81) Rib  99.9 1.2E-27 9.1E-32  178.1  -1.1   81    2-82      1-81  (81)
  6 d2cqla1 d.141.1.1 (A:1-87) Rib  99.9 2.3E-24 1.7E-28  159.1   5.3   82    1-82      2-87  (87)
  7 d1rl6a1 d.141.1.1 (A:7-81) Rib  99.9 4.9E-24 3.6E-28  157.2   4.9   75    8-82      1-75  (75)
  8 d2zjre2 d.141.1.1 (E:5-82) Rib  99.9 2.7E-25 1.9E-29  164.5  -4.4   78    5-82      1-78  (78)
  9 d1vqoe1 d.141.1.1 (E:1-79) Rib  99.9 1.9E-23 1.4E-27  153.8   4.8   77    6-82      2-79  (79)
 10 d1vqoe2 d.141.1.1 (E:80-172) R  99.8   7E-20 5.1E-24  133.0  10.0   87   83-173     1-93  (93)
 11 d2j01h1 d.141.1.1 (H:12-82) Ri  99.8 9.9E-22 7.2E-26  143.8  -1.9   71   12-82      1-71  (71)

No 1  
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=1.1e-40  Score=253.87  Aligned_cols=95  Identities=49%  Similarity=0.816  Sum_probs=93.9

Q ss_pred             EEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf             37778740476301220424999951567655258850389976998899995799898799987410074798578743
Q gi|254780246|r   83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGI  162 (177)
Q Consensus        83 f~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKgI  162 (177)
                      |+++|+++|+||||+++|+.|.|+|||||++.+.+|++++++++++|.|+|+|+|||.||||||+||++|+|||||||||
T Consensus         1 f~k~L~lvGVGYRa~~~g~~L~l~LGySH~i~~~iP~gI~v~~~~~t~i~i~g~dKq~vg~~Aa~Ir~~r~pepYKGKGI   80 (95)
T d2qamg2           1 FTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGV   80 (95)
T ss_dssp             CCCCCCBCSSSCCCCCCTTEECCCSSSSSCCCEECCSSEECCCSSTTCCCCEESCHHHHHHHHHHHHTTTCCCTTSCCSB
T ss_pred             CEEEEEEEEEEEEEEECCCEEEEEEECCEECEECCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf             95899999689999976998999981320010419988479706887899998289999899999861589989689757


Q ss_pred             EECCEEEEEEECCCC
Q ss_conf             453709997105669
Q gi|254780246|r  163 RYSGEVIIRKEGKKK  177 (177)
Q Consensus       163 ~~~~e~I~~KegKkK  177 (177)
                      +|+||+|.|||||||
T Consensus        81 ~y~~E~i~~K~gKkK   95 (95)
T d2qamg2          81 RYADEVVRTKEAKKK   95 (95)
T ss_dssp             CCTTCCCCCCCCCCC
T ss_pred             EECCEEEEECCCCCC
T ss_conf             698819993164679


No 2  
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00  E-value=2.7e-37  Score=234.26  Aligned_cols=90  Identities=49%  Similarity=0.836  Sum_probs=88.9

Q ss_pred             EEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf             37778740476301220424999951567655258850389976998899995799898799987410074798578743
Q gi|254780246|r   83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGI  162 (177)
Q Consensus        83 f~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKgI  162 (177)
                      |+++|+++|+||||+++|+.|.|+|||||++.+.+|++++++++++|.|+|+|+|||.||||||.||++|+|||||||||
T Consensus         1 f~k~L~lvGVGYra~~~g~~L~l~LG~SH~i~~~iP~~I~v~~~~~t~i~i~g~dKq~vg~~aa~Ir~~r~pepYKGKGI   80 (90)
T d2zjre1           1 YTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGV   80 (90)
T ss_dssp             EEEEEECBSTTCCCCCBTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCCBC
T ss_pred             CEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf             97999999999999966998999996014012615787079845887899998699999999999986479998168887


Q ss_pred             EECCEEEEEE
Q ss_conf             4537099971
Q gi|254780246|r  163 RYSGEVIIRK  172 (177)
Q Consensus       163 ~~~~e~I~~K  172 (177)
                      +|+||+|.||
T Consensus        81 ~y~~E~i~~K   90 (90)
T d2zjre1          81 RFVGEQIALK   90 (90)
T ss_dssp             CCSSCCCCCC
T ss_pred             EECCEEEECC
T ss_conf             5978698729


No 3  
>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00  E-value=2.9e-36  Score=228.31  Aligned_cols=89  Identities=54%  Similarity=0.880  Sum_probs=87.3

Q ss_pred             EEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf             37778740476301220424999951567655258850389976998899995799898799987410074798578743
Q gi|254780246|r   83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGI  162 (177)
Q Consensus        83 f~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKgI  162 (177)
                      |+++|+++|+||||+++|+.|.|+|||||++.+.+|++++++++++|.|+|+|+|||.||||||.||++|+|||||||||
T Consensus         1 f~k~L~lvGVGYra~~~g~~L~l~LGySH~I~~~iP~~i~v~~~~~t~i~i~g~dKq~vg~~aa~Ir~~r~pepYKGKGI   80 (89)
T d1rl6a2           1 YEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGI   80 (89)
T ss_dssp             EEEEEEEESTTCEEEEETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCCEE
T ss_pred             CEEEEEEEEEEEEEEECCCEEEEEEEECCEEEEECCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf             96899999799999965998999995132478858998699926896458997489999999999860689989488777


Q ss_pred             EECCEEEEE
Q ss_conf             453709997
Q gi|254780246|r  163 RYSGEVIIR  171 (177)
Q Consensus       163 ~~~~e~I~~  171 (177)
                      +|+||+|++
T Consensus        81 ~y~~E~Irl   89 (89)
T d1rl6a2          81 RYEGELVRL   89 (89)
T ss_dssp             EETTCCCCC
T ss_pred             EECCEEEEC
T ss_conf             698879849


No 4  
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=9.1e-37  Score=231.19  Aligned_cols=89  Identities=51%  Similarity=0.820  Sum_probs=87.2

Q ss_pred             EEEEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf             37778740476301220424999951567655258850389976998899995799898799987410074798578743
Q gi|254780246|r   83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGI  162 (177)
Q Consensus        83 f~~~L~lvgvgy~v~~~g~~l~l~LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKgI  162 (177)
                      |+++|+++|+||||+++|+.|.|+|||||++.+.+|++++++++++|.|+++|+|||.||||||.||++|+|||||||||
T Consensus         1 f~k~LelvGVGYra~~~g~~L~l~LGySH~I~~~iP~~I~v~~~~~t~i~i~g~dK~~vg~~aa~IR~~r~pepYKGKGI   80 (89)
T d2j01h2           1 YSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEKGI   80 (89)
T ss_dssp             CCCEECCCSSSCEECCBTTBEEEECSSSSCEEECCCTTEEEECSSSSCEEEEESCSTTTTHHHHHHHTTSCSCSSSSSSC
T ss_pred             CEEEEEEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf             96999999899999981998999996130012129997699806888899996799999999999860689989588757


Q ss_pred             EECCEEEEE
Q ss_conf             453709997
Q gi|254780246|r  163 RYSGEVIIR  171 (177)
Q Consensus       163 ~~~~e~I~~  171 (177)
                      +|+||+|++
T Consensus        81 ~y~~E~irL   89 (89)
T d2j01h2          81 YYAGEPVRL   89 (89)
T ss_dssp             CCSSCCCC-
T ss_pred             EECCEEEEC
T ss_conf             598879859


No 5  
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=99.92  E-value=1.2e-27  Score=178.08  Aligned_cols=81  Identities=32%  Similarity=0.582  Sum_probs=79.8

Q ss_pred             CCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCE
Q ss_conf             74446451079975899979989999069469998268639997075899850554322013388875211258975110
Q gi|254780246|r    2 SRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTK   81 (177)
Q Consensus         2 SrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~   81 (177)
                      |||||+||.||++|+|+++++.++|+||+|+|++.+++.+.++++++.+.+.+++++++++|||||+||||+|||+|||+
T Consensus         1 SRIgk~pI~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~   80 (81)
T d2qamg1           1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE   80 (81)
T ss_dssp             CGGGGCCCCCCSSCCCCCBTTEECCCCSSSCCCCEECCSEEEECSSSSCEEEECSSCTTTTHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCCCCCCCEEEEECCEEEEEECCEEEEEEECCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEC
T ss_conf             97666770369997999979999999089889999357748997598899983799756899999999999874064308


Q ss_pred             E
Q ss_conf             0
Q gi|254780246|r   82 G   82 (177)
Q Consensus        82 G   82 (177)
                      |
T Consensus        81 G   81 (81)
T d2qamg1          81 G   81 (81)
T ss_dssp             C
T ss_pred             C
T ss_conf             8


No 6  
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.89  E-value=2.3e-24  Score=159.10  Aligned_cols=82  Identities=24%  Similarity=0.434  Sum_probs=74.9

Q ss_pred             CCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEE---ECCEEEEEECCCCCCCHHHHHHHHHEEEEEE
Q ss_conf             97444645107997589997998999906946999826-8639997---0758998505543220133888752112589
Q gi|254780246|r    1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTL---QEGMLSVATINGSKKARAAWGMSRTMINNLF   76 (177)
Q Consensus         1 MSrIgk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~---~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi   76 (177)
                      ||+++++||.||++|+|+++++.++|+||+|+|++.|+ +.+++..   +++.+.+.++.++++++|+|||+||||+|||
T Consensus         2 ~~i~~~~~I~IP~gV~v~i~~~~i~vkGpkG~L~~~~~~~~v~~~~~~~~~~~i~v~~~~~~k~~~a~~GT~rslI~Nmi   81 (87)
T d2cqla1           2 KTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMI   81 (87)
T ss_dssp             CCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSSSCEEEEECCSSSTHHHHHHHHHHHHHHHHH
T ss_pred             CEEECCCCEECCCCCEEEEECCEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHE
T ss_conf             67605885877999799996999999919937999924786107996123347996037877778778787999998621


Q ss_pred             EECCEE
Q ss_conf             751100
Q gi|254780246|r   77 HGVTKG   82 (177)
Q Consensus        77 ~GVt~G   82 (177)
                      +|||+|
T Consensus        82 ~GVt~G   87 (87)
T d2cqla1          82 KGVTLG   87 (87)
T ss_dssp             HHHHTS
T ss_pred             EEEECC
T ss_conf             501188


No 7  
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.88  E-value=4.9e-24  Score=157.17  Aligned_cols=75  Identities=33%  Similarity=0.665  Sum_probs=73.8

Q ss_pred             CCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCEE
Q ss_conf             510799758999799899990694699982686399970758998505543220133888752112589751100
Q gi|254780246|r    8 AIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTKG   82 (177)
Q Consensus         8 ~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~G   82 (177)
                      ||.||++|+|+++++.++|+||+|+|++.+++.+.++++++.+.+.+++++++++|||||+||||+|||+|||+|
T Consensus         1 PI~IP~gV~v~i~~~~i~vkGpkG~L~~~~~~~v~i~~~~~~i~v~~~~~~k~~~al~GT~rsli~Nmi~GVt~G   75 (75)
T d1rl6a1           1 PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKG   75 (75)
T ss_dssp             CEECCTTCEEEEETTEEEEEETTEEEEEECCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCEEEEECCEEEEEECCEEEEEECCCCEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHCEEECCC
T ss_conf             907899969999799999990987799962676899990745787067996778999999999998741522188


No 8  
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.87  E-value=2.7e-25  Score=164.54  Aligned_cols=78  Identities=38%  Similarity=0.618  Sum_probs=76.4

Q ss_pred             CCCCCCCCCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCEE
Q ss_conf             464510799758999799899990694699982686399970758998505543220133888752112589751100
Q gi|254780246|r    5 GKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTKG   82 (177)
Q Consensus         5 gk~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~G   82 (177)
                      ||+||.||++|+|+++++.++|+||+|+|++.+++.+.++++++.+.+.+++++++++|||||+||||+|||+|||+|
T Consensus         1 Gk~pI~IP~~V~v~i~~~~v~vkGpkG~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~GT~rsli~Nmi~GVt~G   78 (78)
T d2zjre2           1 GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDG   78 (78)
T ss_dssp             CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCSSSCCBCCSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCEECCCCCEEEEECCEEEEECCCEEEEEEECCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEEECCC
T ss_conf             997648599979999799999995898899980661999985988999807988778999999999998740634089


No 9  
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=99.87  E-value=1.9e-23  Score=153.77  Aligned_cols=77  Identities=25%  Similarity=0.474  Sum_probs=74.3

Q ss_pred             CCCCCCCCCCEEEEECCEEEEEECCCEEEEEEC-CCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCEE
Q ss_conf             645107997589997998999906946999826-86399970758998505543220133888752112589751100
Q gi|254780246|r    6 KKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS-DGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTKG   82 (177)
Q Consensus         6 k~~I~IP~~V~v~i~~~~i~vkGp~G~l~~~~~-~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~G   82 (177)
                      |.||.||++|+|+++++.++|+||+|+|++.|+ ..+.++.+++.+.+.+++++++++|||||+||||+|||+|||+|
T Consensus         2 k~~I~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G   79 (79)
T d1vqoe1           2 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEG   79 (79)
T ss_dssp             EEEEECCSSCEEEEETTEEEEEETTEEEEEECCCTTCEEEECSSEEEEECSCCSHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCEEECCCCCEEEEECCEEEEECCCEEEEEECCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHEEEEECC
T ss_conf             832577999599996999999949808999956880899980998996467664300566898999998742510088


No 10 
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=99.81  E-value=7e-20  Score=133.01  Aligned_cols=87  Identities=24%  Similarity=0.295  Sum_probs=79.6

Q ss_pred             EEEEEEEE--CCCCEEEECCCEEEEE--ECCCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             37778740--4763012204249999--5156765525885038997699889999579989879998741007479857
Q gi|254780246|r   83 YERKLEIS--GVGCRAFMDGRNLKMS--LGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYK  158 (177)
Q Consensus        83 f~~~L~lv--gvgy~v~~~g~~l~l~--LG~sh~i~~~ip~~v~v~~~k~~~I~i~G~dke~Vgq~AA~Ir~~r~pepYK  158 (177)
                      |+|+|+++  |||+.++++|+.+.+.  ||+++++.+.+|++|++++. +++|+++|+|+|.|||+||+|++.++.   |
T Consensus         1 f~Ykmk~vyaHFPi~v~v~g~~v~I~NFlGEK~~R~~~i~~gv~v~v~-~deiiv~G~d~E~V~qtAA~Ieq~t~v---k   76 (93)
T d1vqoe2           1 WEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEID-GEELTVSGPDIEAVGQTAADIEQLTRI---N   76 (93)
T ss_dssp             EEEEEEEECSSSCCEEEEETTEEEEESGGGCSSCEEEECCTTCEEEEE-TTEEEEEESCHHHHHHHHHHHHHTTCC---S
T ss_pred             CEEEEEEEEEECCEEEEECCCEEEEEECCCCCEEEEEEECCCCEEEEC-CCEEEEECCCHHHHHHHHHHHHHHHCC---C
T ss_conf             989999999748839998288899983267745179996699806772-888999757899987889988775353---7


Q ss_pred             CCCE--EECCEEEEEEE
Q ss_conf             8743--45370999710
Q gi|254780246|r  159 GKGI--RYSGEVIIRKE  173 (177)
Q Consensus       159 GKgI--~~~~e~I~~Ke  173 (177)
                      +||+  |+||+||..|.
T Consensus        77 ~kD~R~FlDGIYv~eKp   93 (93)
T d1vqoe2          77 DKDVRVFQDGVYITRKP   93 (93)
T ss_dssp             SSCTTTCCCEEEEEECC
T ss_pred             CCCCCEEECCEEEEECC
T ss_conf             99765833488997359


No 11 
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=99.79  E-value=9.9e-22  Score=143.76  Aligned_cols=71  Identities=37%  Similarity=0.667  Sum_probs=69.6

Q ss_pred             CCCCEEEEECCEEEEEECCCEEEEEECCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHEEEEEEEECCEE
Q ss_conf             99758999799899990694699982686399970758998505543220133888752112589751100
Q gi|254780246|r   12 PLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTKG   82 (177)
Q Consensus        12 P~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~i~~~~~~k~~ka~~GT~rsli~Nmi~GVt~G   82 (177)
                      |++|+|+++++.|+|+||+|+|++.+++.+.+.++++.+.+.+++++++++|||||+||||+|||+|||+|
T Consensus         1 P~gV~v~i~~~~v~vkGpkG~l~~~~~~~i~i~~~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G   71 (71)
T d2j01h1           1 PKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEG   71 (71)
T ss_dssp             CTTCEEEECSSCEEEECSSCCEECCCCSSSCCCCCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEECCEEEEECCCEEEEEECCCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEECCC
T ss_conf             99669999799999997897899981685699992988999856998488999999999998751543088


Done!