PSIBLAST alignment of GI: 254780246 and protein with PDB id: 2j01
gi|116668239|pdb|2J01|H Chain H, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 180
>gi|116668300|pdb|2J03|H Chain H, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii. Length = 180
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 83/180 (46%), Positives = 117/180 (65%), Gaps = 3/180 (1%)
Query: 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKK 60
MSRIG+ I VP GV V V +KVKGPKG+L +S + V ++EG++ V + ++
Sbjct: 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERR 60
Query: 61 ARAAWGMSRTMINNLFHGVTKGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEG 120
++ G++RT+I N GV++GY ++L I G+G RA + GR L++++GFSH V+ P EG
Sbjct: 61 HKSLHGLTRTLIANAVKGVSEGYSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEG 120
Query: 121 ISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGIRYSGEVIIRKEGK---KK 177
I+ V +PT + VSGIDKQKVG VAA IR+ R Y KGI Y+GE + K GK KK
Sbjct: 121 ITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEKGIYYAGEPVRLKPGKAGAKK 180