PSIBLAST alignment of GI: 254780246 and protein with PDB id: 2j01

gi|116668239|pdb|2J01|H Chain H, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 180
>gi|116668300|pdb|2J03|H Chain H, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii. Length = 180
 Score =  164 bits (416), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 83/180 (46%), Positives = 117/180 (65%), Gaps = 3/180 (1%)

Query: 1   MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKK 60
           MSRIG+  I VP GV V V    +KVKGPKG+L   +S  + V ++EG++ V   +  ++
Sbjct: 1   MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERR 60

Query: 61  ARAAWGMSRTMINNLFHGVTKGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEG 120
            ++  G++RT+I N   GV++GY ++L I G+G RA + GR L++++GFSH V+  P EG
Sbjct: 61  HKSLHGLTRTLIANAVKGVSEGYSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEG 120

Query: 121 ISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGIRYSGEVIIRKEGK---KK 177
           I+  V +PT + VSGIDKQKVG VAA IR+ R    Y  KGI Y+GE +  K GK   KK
Sbjct: 121 ITFEVPEPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEKGIYYAGEPVRLKPGKAGAKK 180