RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780246|ref|YP_003064659.1| 50S ribosomal protein L6
[Candidatus Liberibacter asiaticus str. psy62]
(177 letters)
>gnl|CDD|177062 CHL00140, rpl6, ribosomal protein L6; Validated.
Length = 178
Score = 204 bits (522), Expect = 9e-54
Identities = 93/175 (53%), Positives = 124/175 (70%)
Query: 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKK 60
MSRIGK I++P V+V+++D IKVKGPKG LS + D I++ +Q+ L V+ + SKK
Sbjct: 1 MSRIGKLPIKIPDNVNVSIDDQIIKVKGPKGTLSRKIPDLITIEIQDNSLFVSKKDESKK 60
Query: 61 ARAAWGMSRTMINNLFHGVTKGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEG 120
ARA G+ RT+INN+ GV++G+E+KLE+ GVG RA + G++L ++LG+SH V G
Sbjct: 61 ARALHGLYRTLINNMVIGVSEGFEKKLELQGVGYRAQVQGKDLILNLGYSHPVKIKIPPG 120
Query: 121 ISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGIRYSGEVIIRKEGK 175
IS+ V T I + GIDK+ VG AA+IRS R EPYKGKGIRY GEVI RK GK
Sbjct: 121 ISVEVENNTNITIKGIDKELVGQFAAKIRSVRPPEPYKGKGIRYKGEVIRRKAGK 175
>gnl|CDD|30446 COG0097, RplF, Ribosomal protein L6P/L9E [Translation, ribosomal
structure and biogenesis].
Length = 178
Score = 198 bits (504), Expect = 9e-52
Identities = 91/176 (51%), Positives = 116/176 (65%)
Query: 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKK 60
MSRIGK+ I +P GV V++E + VKGPKG+L+ D + E + V K+
Sbjct: 1 MSRIGKRPIVIPAGVTVSIEGQVVTVKGPKGELTREFHDNVVKVEVEDNILVVRPVDGKR 60
Query: 61 ARAAWGMSRTMINNLFHGVTKGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEG 120
RA G R +INN+ GVT+G+E+KLEI GVG RA + G NL++ LG+SH V+ EG
Sbjct: 61 KRALHGTVRALINNMVKGVTEGFEKKLEIVGVGYRAQVVGGNLELFLGYSHPVVIEIPEG 120
Query: 121 ISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGIRYSGEVIIRKEGKK 176
I++ V PTEI+V GIDK+ VG VAA IR+ R EPYKGKGIRY GE I RKEGK
Sbjct: 121 ITVEVPGPTEIVVEGIDKELVGQVAANIRAARKPEPYKGKGIRYDGEYIRRKEGKT 176
>gnl|CDD|38464 KOG3254, KOG3254, KOG3254, Mitochondrial/chloroplast ribosomal
protein L6 [Translation, ribosomal structure and
biogenesis].
Length = 211
Score = 144 bits (364), Expect = 1e-35
Identities = 65/179 (36%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Query: 2 SRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVT---LQEGMLSVATINGS 58
+GKK I V +E +++VKGP G+L+ + ++++ + GM + +
Sbjct: 32 VYVGKKEIIVKENKQRDLEGEQLQVKGPHGELNLRFPNYLNLSNDKKKSGMDANIKKQET 91
Query: 59 KKARAAWGMSRTMINNLFHGVTKGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPL 118
KK RA WG R ++ N GVT G+ + L++ GVG RA ++G+ L + LG+SHDVL +
Sbjct: 92 KKQRAMWGTFRALLANNVKGVTMGFLKILKLVGVGYRASLEGKFLHLKLGYSHDVLLSIP 151
Query: 119 EGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGIRYSGEVIIRKEGKKK 177
+ + PT +++ GIDKQKV AA++RS++ EPYKGKGI E + K K
Sbjct: 152 TDVQVKNPTPTSLVLRGIDKQKVTQFAAKVRSFKPPEPYKGKGIYVDDEKVKLKAKKSI 210
>gnl|CDD|109407 pfam00347, Ribosomal_L6, Ribosomal protein L6.
Length = 76
Score = 83.8 bits (208), Expect = 2e-17
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 91 GVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRS 150
VG R +DG NL + LG ++ G+++ V K T IIVSGIDK+KVG AA I +
Sbjct: 2 PVGVRVSIDGVNLVLVLGPKGELTREIPPGVTVKVEKITVIIVSGIDKEKVGQFAALIGT 61
Query: 151 YRSAEPYKGKGIRY 164
YR+ P GKG+ Y
Sbjct: 62 YRAPIPNMGKGVSY 75
Score = 48.7 bits (117), Expect = 8e-07
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 11 VPLGVDVAVED-HEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKAR-----AA 64
+P+GV V+++ + + V GPKG+L+ + G++V +++ ++V ++G K + A
Sbjct: 1 IPVGVRVSIDGVNLVLVLGPKGELTREIPPGVTVKVEK--ITVIIVSGIDKEKVGQFAAL 58
Query: 65 WGMSRTMINNLFHGVTKG 82
G R I N+ GV+ G
Sbjct: 59 IGTYRAPIPNMGKGVSYG 76
>gnl|CDD|38465 KOG3255, KOG3255, KOG3255, 60S ribosomal protein L9 [Translation,
ribosomal structure and biogenesis].
Length = 179
Score = 35.3 bits (81), Expect = 0.008
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 9 IQVPLGVDVAVEDHEIKVKGPKGQL--SFMM--SDGISVTLQEGMLSVATINGSKKARAA 64
+ +P VD+ ++ H + VKGP+G L F + + ++ L + G++K A
Sbjct: 10 VHIPENVDITLKGHVVIVKGPRGTLWRDFNHINVELSLLGKKKKRLKIDKWWGTRKGVAC 69
Query: 65 WGMSRTMINNLFHGVTKGYERK 86
+ I N GVT G+ K
Sbjct: 70 LRTVVSHIENCIKGVTIGFIYK 91
>gnl|CDD|31637 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino
acid transport and metabolism].
Length = 396
Score = 26.3 bits (58), Expect = 4.7
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 2/121 (1%)
Query: 30 KGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLFHGVTKGYERKLEI 89
QL ++ S G VATI + + RA W + + + L+
Sbjct: 272 LSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKA 331
Query: 90 SGVGCR--AFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVGHVAAE 147
G + R + G S + + E I++ I V+G++ + +VA
Sbjct: 332 LGAPRNFDFIISQRGMFSYTGLSPEQVDRLREEFGIYLVASGRINVAGLNTSNIDYVAKA 391
Query: 148 I 148
I
Sbjct: 392 I 392
>gnl|CDD|30315 cd02783, MopB_CT_2, The MopB_CT_2 CD includes a group of related
uncharacterized bacterial and archaeal
molybdopterin-binding oxidoreductase-like domains with a
putative N-terminal iron-sulfur [4Fe-4S] cluster binding
site and molybdopterin cofactor binding site. This CD is
of the conserved molybdopterin_binding C-terminal
(MopB_CT) region present in many, but not all, MopB
homologs..
Length = 156
Score = 26.1 bits (57), Expect = 4.7
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 10/57 (17%)
Query: 42 SVTLQEGMLSVATINGSKKARAAWGMSRT--------MINNLFHGVTKGYERKLEIS 90
+ T++ G +V T N K AWG+ ++N+L + IS
Sbjct: 68 TETVEPG--TVWTWNAIGKRPGAWGLKPDAPESVKGFLLNHLINDSLPPPGDAKRIS 122
>gnl|CDD|36147 KOG0929, KOG0929, KOG0929, Guanine nucleotide exchange factor
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 1514
Score = 25.7 bits (56), Expect = 6.4
Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 102 NLKMSLGFSHDVLYTPLE-GISIFVSKPTEIIVSGIDKQKVGHVAAEIRSY-RSAEPY-K 158
+ F L+ GI +F KP + I K VG EI + E K
Sbjct: 502 DADDPEQFEALKSEKQLQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIGTEGLSK 561
Query: 159 GKGIRYSGE 167
Y GE
Sbjct: 562 TILGDYLGE 570
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.135 0.381
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,003,185
Number of extensions: 97659
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 10
Length of query: 177
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 89
Effective length of database: 4,362,145
Effective search space: 388230905
Effective search space used: 388230905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)