RPSBLAST alignment of GI: 254780246 and protein with PDBid: 1nkw

>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E* Length = 212

 Score =  187 bits (476), Expect = 1e-48
 Identities = 80/176 (45%), Positives = 110/176 (62%)

Query: 1   MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKK 60
           MSRIGK+ I VP GV V  +D   KVKGPKG+L+   +  ++V      L V   + ++K
Sbjct: 28  MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQK 87

Query: 61  ARAAWGMSRTMINNLFHGVTKGYERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEG 120
            RA  G++RT++ N   GV+ GY   LE+ GVG RA + G+ L+M++G+SH V+  P  G
Sbjct: 88  HRALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAG 147

Query: 121 ISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGIRYSGEVIIRKEGKK 176
           ++  V +PT I VSGIDKQ VG VAA +R  R  + Y GKG+R+ GE I  K GK 
Sbjct: 148 VTFAVPEPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVRFVGEQIALKAGKA 203