RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780246|ref|YP_003064659.1| 50S ribosomal protein L6 [Candidatus Liberibacter asiaticus str. psy62] (177 letters) >d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Length = 95 Score = 131 bits (331), Expect = 4e-32 Identities = 47/95 (49%), Positives = 65/95 (68%) Query: 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVG 142 + +KL++ GVG RA + G + +SLGFSH V + GI+ TEI++ G DKQ +G Sbjct: 1 FTKKLQLVGVGYRAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIG 60 Query: 143 HVAAEIRSYRSAEPYKGKGIRYSGEVIIRKEGKKK 177 VAA++R+YR EPYKGKG+RY+ EV+ KE KKK Sbjct: 61 QVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK 95 >d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Length = 89 Score = 121 bits (305), Expect = 4e-29 Identities = 45/87 (51%), Positives = 60/87 (68%) Query: 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVG 142 Y ++L I G+G RA + GR L++++GFSH V+ P EGI+ V +PT + VSGIDKQKVG Sbjct: 1 YSKELLIKGIGYRARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVG 60 Query: 143 HVAAEIRSYRSAEPYKGKGIRYSGEVI 169 VAA IR+ R Y KGI Y+GE + Sbjct: 61 QVAANIRAIRKPSAYHEKGIYYAGEPV 87 >d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Length = 90 Score = 117 bits (296), Expect = 4e-28 Identities = 44/90 (48%), Positives = 59/90 (65%) Query: 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVG 142 Y LE+ GVG RA + G+ L+M++G+SH V+ P G++ V +PT I VSGIDKQ VG Sbjct: 1 YTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVG 60 Query: 143 HVAAEIRSYRSAEPYKGKGIRYSGEVIIRK 172 VAA +R R + Y GKG+R+ GE I K Sbjct: 61 QVAANVRKVRKPDAYHGKGVRFVGEQIALK 90 >d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Length = 89 Score = 115 bits (290), Expect = 2e-27 Identities = 48/87 (55%), Positives = 61/87 (70%) Query: 83 YERKLEISGVGCRAFMDGRNLKMSLGFSHDVLYTPLEGISIFVSKPTEIIVSGIDKQKVG 142 YE+ LE+ GVG RA G+ L +S+G+SH V P EG+ I V T+IIV G DKQ+VG Sbjct: 1 YEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVG 60 Query: 143 HVAAEIRSYRSAEPYKGKGIRYSGEVI 169 +AA IR+ R EPYKGKGIRY GE++ Sbjct: 61 ELAANIRAVRPPEPYKGKGIRYEGELV 87 >d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Length = 81 Score = 86.0 bits (213), Expect = 2e-18 Identities = 26/81 (32%), Positives = 44/81 (54%) Query: 2 SRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKA 61 SR+ K + VP GVDV + I +KG G+L+ ++D + V + L+ +G Sbjct: 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADG 60 Query: 62 RAAWGMSRTMINNLFHGVTKG 82 A G +R ++N++ GVT+G Sbjct: 61 WAQAGTARALLNSMVIGVTEG 81 >d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Length = 78 Score = 79.4 bits (196), Expect = 1e-16 Identities = 30/78 (38%), Positives = 45/78 (57%) Query: 5 GKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAA 64 GK+ I VP GV V +D KVKGPKG+L+ + ++V L V + ++K RA Sbjct: 1 GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRAL 60 Query: 65 WGMSRTMINNLFHGVTKG 82 G++RT++ N GV+ G Sbjct: 61 HGLTRTLVANAVKGVSDG 78 >d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Length = 75 Score = 76.4 bits (188), Expect = 1e-15 Identities = 25/74 (33%), Positives = 46/74 (62%) Query: 9 IQVPLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMS 68 I++P GV V V + + VKGPKG+L+ +++T++ +++V + K RA G + Sbjct: 2 IEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTT 61 Query: 69 RTMINNLFHGVTKG 82 R+++ N+ GV+KG Sbjct: 62 RSLLANMVEGVSKG 75 >d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Length = 71 Score = 76.0 bits (187), Expect = 2e-15 Identities = 26/71 (36%), Positives = 44/71 (61%) Query: 12 PLGVDVAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTM 71 P GV V V +KVKGPKG+L +S + V ++EG++ V + ++ ++ G++RT+ Sbjct: 1 PKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTL 60 Query: 72 INNLFHGVTKG 82 I N GV++G Sbjct: 61 IANAVKGVSEG 71 >d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Score = 70.7 bits (173), Expect = 6e-14 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Query: 1 MSRIGKKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMS----DGISVTLQEGMLSVATIN 56 + + + + +P VD+ ++ + VKGP+G L + + + ++ L V Sbjct: 2 KTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWW 61 Query: 57 GSKKARAAWGMSRTMINNLFHGVTKG 82 G++K A + + N+ GVT G Sbjct: 62 GNRKELATVRTICSHVQNMIKGVTLG 87 >d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 79 Score = 68.8 bits (168), Expect = 2e-13 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 6 KKAIQVPLGVDVAVEDHEIKVKGPKGQLSFMMSD-GISVTLQEGMLSVATINGSKKARAA 64 + +++P VD + +I V+G G ++ + I V++ + + + + K + Sbjct: 2 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMST 61 Query: 65 WGMSRTMINNLFHGVTKG 82 G ++ I N+FHGVT+G Sbjct: 62 IGTFQSHIENMFHGVTEG 79 >d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 93 Score = 31.2 bits (71), Expect = 0.050 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%) Query: 118 LEGISIFVSKPTEIIVSGIDKQKVGHVAAEIRSYRSAEPYKGKGIR 163 + + E+ VSG D + VG AA+I K +R Sbjct: 40 HGDTDVEIDG-EELTVSGPDIEAVGQTAADI---EQLTRINDKDVR 81 >d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a {Aquifex aeolicus [TaxId: 63363]} Length = 187 Score = 25.0 bits (54), Expect = 3.7 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 12/71 (16%) Query: 17 VAVEDHEIKVKGPKGQLSFMMSDGISVTLQEGMLSVATINGSKKARAAWGMSRTMINNLF 76 VA ED +F GI + + + +++ + NLF Sbjct: 24 VATEDR-----------NFWHHFGIDPVAIVRAA-IVNYRAGRIVQGGSTITQQLAKNLF 71 Query: 77 HGVTKGYERKL 87 + ERK+ Sbjct: 72 LTRERTLERKI 82 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.135 0.381 Gapped Lambda K H 0.267 0.0648 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 641,726 Number of extensions: 27919 Number of successful extensions: 59 Number of sequences better than 10.0: 1 Number of HSP's gapped: 57 Number of HSP's successfully gapped: 14 Length of query: 177 Length of database: 2,407,596 Length adjustment: 80 Effective length of query: 97 Effective length of database: 1,309,196 Effective search space: 126992012 Effective search space used: 126992012 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.2 bits)